|
|
|
|
|
|
|
| Information on SUBCLASS 5.31.1 |
|
Subclass Accession number: 6411
Subclass: 5.31.1 
Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: 
 Consensus coordinates:
|
Number of loops: 4 Average sequence ID (%) : 8.3 +/- 14.8 Average RMSD (Å) : 1.025 +/- 0.206 Consensus geometry
|
| Consensus Sequence: | XXXXhXXph |
| (φψ)-conformation: | bbab_bpbb |
| Pattern: | x | x | x | x | [FQR] | x | [EGP] | x | [PQS] | x | x | [IVY] |
| Conservation: | -0.437 | -1.166 | -0.387 | -0.646 | 0.198 | 0.834 | 0.879 | -0.300 | 1.402 | -0.646 | -1.425 | 1.694 |
| Loops included in this Subclass |
| Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
| 1kq6_A_14 | 1kq6 | A | 14 | 25 | FEKRFVPSQHYV | EEEE-SSS-EEE | bbxxabwbxbxb |
| 1mda_H_318 | 1mda | H | 319 | 330 | IIAAQDGASDNY | EEE--SSS-EEE | bbbxababxxxx |
| 1ujn_A_2 | 1ujn | A | 3 | 14 | RLEVREPVPYPI | EEEE-SSS-EEE | bbbbabwbxbxb |
| 2bbk_H_322 | 2bbk | H | 323 | 334 | INVSQDEKPLLY | EEE--SSS-EEE | bbbxaxabxxbx |
| PDB ligands within a cut-off distance of 6 Å in this subclass |
| Loop | PDB | Chain | Ligands | Residue |
| 1kq6_A_14 | 1kq6 | A | MSESELENOMETHIONINE | F - 14 |
| 1kq6_A_14 | 1kq6 | A | MSESELENOMETHIONINE | E - 15 |
| 1kq6_A_14 | 1kq6 | A | GOLGLYCEROL | F - 18 |
| 1kq6_A_14 | 1kq6 | A | GOLGLYCEROL | V - 19 |
| 1kq6_A_14 | 1kq6 | A | GOLGLYCEROL | P - 20 |
| 1kq6_A_14 | 1kq6 | A | GOLGLYCEROL | S - 21 |
| 1kq6_A_14 | 1kq6 | A | SULSULFATE ANION | H - 23 |
| 1kq6_A_14 | 1kq6 | A | SULSULFATE ANION | Y - 24 |
| 1kq6_A_14 | 1kq6 | A | MSESELENOMETHIONINE | V - 25 |
| Clusters included in this Subclass |
| CLUSTER: HA.5.210 |
| CLUSTER: HA.6.103 |
| For any comment or web-related incidence, send an email to the webmaster. |
|