ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 4.64.1

Subclass Accession number: 7431
Subclass: 4.64.1

Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 28.6 +/- 17.6
Average RMSD (Å) : 0.400 +/- 0.100

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	hhhSGGXD
(φψ)-conformation:	bppagpaa

Pattern:	[GKR]	[FIV]	[GIV]	[IL]	[AG]	[FIL]	[S]	[G]	[G]	x	[D]	[ST]	[ST]	[ALV]	[AT]	[AGL]	x	[LW]	[ALM]	[HQR]	x
Conservation:	-0.677	-0.288	-1.066	0.331	0.234	-0.288	0.880	2.048	2.048	-1.001	2.048	0.140	0.150	-0.677	-0.118	-1.196	-0.677	-0.183	-0.612	-0.158	-0.937

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1gpm_A_229	1gpm	A	229	249	KVILGLSGGVDSSVTAMLLHR	EEEEE--SSHHHHHHHHHHHH	xbbbxxavxaaaaaaaaaaaa
1k92_A_12	1k92	A	12	32	RIGIAFSGGLDTSAALLWMRQ	EEEEE--SSHHHHHHHHHHHH	xbxbxxagxaaaaaaaaaaaa
1kqp_A_40	1kqp	A	40	60	GFVLGISGGQDSTLAGRLAQL	EEEEE--SSHHHHHHHHHHHH	ebbbxbavxaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1gpm_A_229	1gpm	A	AMPADENOSINE MONOPHOSPHATE	L - 232
1gpm_A_229	1gpm	A	POPPYROPHOSPHATE 2-	G - 233
1gpm_A_229	1gpm	A	AMPADENOSINE MONOPHOSPHATE	G - 233
1gpm_A_229	1gpm	A	AMPADENOSINE MONOPHOSPHATE	L - 234
1gpm_A_229	1gpm	A	POPPYROPHOSPHATE 2-	S - 235
1gpm_A_229	1gpm	A	AMPADENOSINE MONOPHOSPHATE	S - 235
1gpm_A_229	1gpm	A	POPPYROPHOSPHATE 2-	G - 236
1gpm_A_229	1gpm	A	POPPYROPHOSPHATE 2-	G - 237
1gpm_A_229	1gpm	A	POPPYROPHOSPHATE 2-	V - 238
1gpm_A_229	1gpm	A	POPPYROPHOSPHATE 2-	D - 239
1gpm_A_229	1gpm	A	AMPADENOSINE MONOPHOSPHATE	D - 239
1gpm_A_229	1gpm	A	POPPYROPHOSPHATE 2-	S - 240
1gpm_A_229	1gpm	A	AMPADENOSINE MONOPHOSPHATE	S - 240
1gpm_A_229	1gpm	A	POPPYROPHOSPHATE 2-	S - 241
1k92_A_12	1k92	A	CRYPROPANE-1,2,3-TRIOL	Q - 32
1kqp_A_40	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	L - 43
1kqp_A_40	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	G - 44
1kqp_A_40	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	I - 45
1kqp_A_40	1kqp	A	POPPYROPHOSPHATE 2-	I - 45
1kqp_A_40	1kqp	A	MGMAGNESIUM ION	S - 46
1kqp_A_40	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	S - 46
1kqp_A_40	1kqp	A	POPPYROPHOSPHATE 2-	S - 46
1kqp_A_40	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	G - 47
1kqp_A_40	1kqp	A	POPPYROPHOSPHATE 2-	G - 47
1kqp_A_40	1kqp	A	MGMAGNESIUM ION	G - 48
1kqp_A_40	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	G - 48
1kqp_A_40	1kqp	A	POPPYROPHOSPHATE 2-	G - 48
1kqp_A_40	1kqp	A	MGMAGNESIUM ION	Q - 49
1kqp_A_40	1kqp	A	POPPYROPHOSPHATE 2-	Q - 49
1kqp_A_40	1kqp	A	MGMAGNESIUM ION	D - 50
1kqp_A_40	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	D - 50
1kqp_A_40	1kqp	A	POPPYROPHOSPHATE 2-	D - 50
1kqp_A_40	1kqp	A	MGMAGNESIUM ION	S - 51
1kqp_A_40	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	S - 51
1kqp_A_40	1kqp	A	POPPYROPHOSPHATE 2-	S - 51
1kqp_A_40	1kqp	A	POPPYROPHOSPHATE 2-	T - 52
1kqp_A_40	1kqp	A	POPPYROPHOSPHATE 2-	L - 53

Clusters included in this Subclass

CLUSTER: EH.3.217