ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.8.2

Subclass Accession number: 7828
Subclass: 2.8.2

PSSM

Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 3

Average sequence ID (%) : 74.1 +/- -31.8
Average RMSD (Å) : 0.133 +/- 0.058

Consensus geometry

d (Å): 7

delta (°): 90-135

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	IhGTGp
(φψ)-conformation:	bbFabb

Pattern:	[C]	[AE]	[V]	[G]	[L]	[I]	[IV]	[G]	[T]	[G]	[ST]	[N]	[AV]	[AC]	[Y]	[IM]	[E]	[DE]
Conservation:	2.390	-1.493	-0.301	0.775	-0.301	-0.301	-0.564	0.775	0.237	0.775	-0.914	0.775	-1.374	-0.627	1.313	-0.956	0.237	-0.447

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bdg_*_224	1bdg	-	224	241	CAVGLIVGTGTNVAYIED	EEEEEEESSSEEEEEEEE	xabbxbbFabbbbbbxbx
1cza_N_224	1cza	N	224	241	CEVGLIIGTGTNACYMEE	EEEEEEESSSEEEEEEEE	xabbbbbFabbbbbbxbx
1cza_N_672	1cza	N	672	689	CEVGLIVGTGSNACYMEE	EEEEEEESSSEEEEEEEE	xabbbbbFabbbbbbxbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1bdg_*_224	1bdg	*	GLCGLUCOSE	I - 229
1bdg_*_224	1bdg	*	GLCGLUCOSE	G - 231
1bdg_*_224	1bdg	*	GLCGLUCOSE	T - 232
1bdg_*_224	1bdg	*	GLCGLUCOSE	G - 233
1bdg_*_224	1bdg	*	GLCGLUCOSE	T - 234
1bdg_*_224	1bdg	*	GLCGLUCOSE	N - 235
1bdg_*_224	1bdg	*	GLCGLUCOSE	V - 236
1cza_N_224	1cza	N	G6PALPHA-D-GLUCOSE-6-PHOSPHATE	I - 229
1cza_N_224	1cza	N	G6PALPHA-D-GLUCOSE-6-PHOSPHATE	I - 230
1cza_N_224	1cza	N	G6PALPHA-D-GLUCOSE-6-PHOSPHATE	G - 231
1cza_N_224	1cza	N	G6PALPHA-D-GLUCOSE-6-PHOSPHATE	T - 232
1cza_N_224	1cza	N	G6PALPHA-D-GLUCOSE-6-PHOSPHATE	G - 233
1cza_N_224	1cza	N	GLCGLUCOSE	A - 236
1cza_N_672	1cza	N	GLCGLUCOSE	I - 677
1cza_N_672	1cza	N	G6PALPHA-D-GLUCOSE-6-PHOSPHATE	I - 677
1cza_N_672	1cza	N	G6PALPHA-D-GLUCOSE-6-PHOSPHATE	V - 678
1cza_N_672	1cza	N	GLCGLUCOSE	G - 679
1cza_N_672	1cza	N	G6PALPHA-D-GLUCOSE-6-PHOSPHATE	G - 679
1cza_N_672	1cza	N	GLCGLUCOSE	T - 680
1cza_N_672	1cza	N	G6PALPHA-D-GLUCOSE-6-PHOSPHATE	T - 680
1cza_N_672	1cza	N	GLCGLUCOSE	G - 681
1cza_N_672	1cza	N	G6PALPHA-D-GLUCOSE-6-PHOSPHATE	G - 681
1cza_N_672	1cza	N	GLCGLUCOSE	S - 682
1cza_N_672	1cza	N	GLCGLUCOSE	N - 683
1cza_N_672	1cza	N	GLCGLUCOSE	A - 684

Clusters included in this Subclass

CLUSTER: HA.2.112