Information on SUBCLASS 5.10.1 |
Subclass Accession number: 7948
Subclass: 5.10.1 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 7 Average sequence ID (%) : 10.4 +/- 13.5 Average RMSD (Å) : 0.986 +/- 0.402 Consensus geometry
|
Consensus Sequence: | XXXXcpXhX |
(φψ)-conformation: | bbppgbpbb |
Pattern: | x | x | [cqst] | x | [DEKPQ] | [DGN] | [erty] | x | [AMPTV] | x | [fikl] |
Conservation: | -0.458 | -0.648 | -0.041 | -0.543 | 0.889 | 2.227 | -0.377 | -0.603 | 0.361 | -1.491 | 0.685 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1d0c_A_293 | 1d0c | A | 294 | 304 | LLQAPDEAPEL | EEE-TTS--EE | bbbxplbxxbb |
1hyo_A_389 | 1hyo | A | 395 | 405 | HCQGDGYRVGF | EEE-SS-EEEE | bxbxxvbbxba |
1lvm_A_73 | 1lvm | A | 74 | 84 | QHLIDGRDMII | EEE-TTSS-EE | bbxxpvbxbbb |
1m8t_A_75 | 1m8t | A | 75 | 84 | YDCSEGTLTC. | EEE-SS-EEE. | bbbxxgxbbx. |
1mjt_A_160 | 1mjt | A | 161 | 171 | IYQLPNESVKF | EEE-TTS--EE | bbbxxvbxxbb |
1nd4_A_35 | 1nd4 | A | 38 | 48 | RLSAQGRPVLF | EEE-TTS--EE | bbbbpvbpxbb |
1qw9_A_359 | 1qw9 | A | 359 | 369 | IMTEKNGPAWK | EEE-TTS-EEE | bbbbxUbxbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1m8t_A_75 | 1m8t | A | HEZHEXANE-1,6-DIOL | D - 76 |
1m8t_A_75 | 1m8t | A | HEZHEXANE-1,6-DIOL | C - 77 |
1m8t_A_75 | 1m8t | A | HEZHEXANE-1,6-DIOL | S - 78 |
1m8t_A_75 | 1m8t | A | HEZHEXANE-1,6-DIOL | E - 79 |
1nd4_A_35 | 1nd4 | A | ACTACETATE ION | F - 48 |
Clusters included in this Subclass |
CLUSTER: HA.5.43 |