ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 6.3.2

Subclass Accession number: 8640
Subclass: 6.3.2

PSSM

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 8

Average sequence ID (%) : 19.0 +/- 18.4
Average RMSD (Å) : 1.113 +/- 0.181

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	XXchXXXpXh
(φψ)-conformation:	aagpbpgpbb

Pattern:	[glpv]	x	[DEHKQ]	x	[AKLT]	[EGK]	[AIL]	[pqrs]	[aepq]	[agkn]	[dsv]	x	[ILPV]	[ltv]	[aflv]
Conservation:	-1.177	-1.465	1.177	-1.087	-0.200	1.081	1.963	-0.485	-0.574	0.261	0.390	-0.760	1.123	0.184	-0.431

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bkj_A_136	1bkj	A	139	153	VDELLGLPENSAVLF	HHHHTT--TTEEEEE	aaaaavxxxvbbxab
1f5v_A_136	1f5v	A	139	153	VTKLLKLPQHVLPLF	HHHHTT--TTEEEEE	aaaaalxxxvbbwab
1gq5_A_47	1gq5	A	47	61	PAEKAGLLAGDRLVE	HHHHHT--TT-EEEE	aaaaavxbpgxxxab
1l0w_A_371	1l0w	A	374	388	LLQATEARPGDTLLF	HHHHH---TT-EEEE	aaaaavxbpgxbxbb
1lcy_A_268	1lcy	A	268	282	PAHRAGLRPGDVILA	HHHHHT--TT-EEEE	aaaaagxbpgpbxab
1m8p_A_89	1m8p	A	91	105	VIDEKKLQAASRITL	HHHHTT--TT-EEEE	aaaaavbbpvxbxbx
1mdb_A_53	1mdb	A	66	80	GFQKLGIQQKDRVVV	HHHHHT--TT-EEEE	aaaaagxbpvxxbxb
1qcs_A_64	1qcs	A	66	80	QRKWAGLSIGQEIEV	HHHHHT--TT---EE	aaaaavbbxvxxbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1bkj_A_136	1bkj	A	FMNFLAVIN MONONUCLEOTIDE	F - 153
1qcs_A_64	1qcs	A	MSESELENOMETHIONINE	Q - 76
1qcs_A_64	1qcs	A	MSESELENOMETHIONINE	E - 77
1qcs_A_64	1qcs	A	MSESELENOMETHIONINE	I - 78
1qcs_A_64	1qcs	A	MSESELENOMETHIONINE	E - 79
1qcs_A_64	1qcs	A	MSESELENOMETHIONINE	V - 80
1qcs_A_64	1qcs	A	MSESELENOMETHIONINE	A - 81
1qcs_A_64	1qcs	A	MSESELENOMETHIONINE	L - 82

Clusters included in this Subclass

CLUSTER: HE.7.14