ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 8.7.1

Subclass Accession number: 8720
Subclass: 8.7.1

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 5

Average sequence ID (%) : 36.1 +/- 28.5
Average RMSD (Å) : 0.860 +/- 0.639

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	pphXXpXXppVV
(φψ)-conformation:	aabpaaaaaabb

Pattern:	[LT]	[ai]	[aekq]	[CV]	[FV]	[AL]	[ADST]	[HQ]	[ILT]	x	[AK]	x	[al]	[ADKNQ]	[hk]	[FIL]	[KPST]	[KL]	[ADE]	[ADK]	[RW]	[AKNS]	[EKNQR]	[IV]	[IV]	[IL]	[AL]	[FY]
Conservation:	0.341	-1.107	-1.148	0.351	0.111	-0.330	-0.661	1.014	-0.165	-1.162	0.031	-0.491	-1.251	-1.049	-0.633	0.130	-0.756	-0.012	0.110	-0.925	2.056	-0.521	-0.259	1.384	1.384	0.913	-0.049	2.694

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1hrk_A_231	1hrk	A	233	260	LIQCFADHILKELDHFPLEKRSEVVILF	HHHHHHHHHHHHHTTS-GGGGGG-EEEE	aaaaaaaaaaaaaaaxxaaaaaapbxbx
1kv5_A_139	1kv5	A	139	166	TAVVVLTQIAAIAKKLKKADWAKVVIAY	HHHHHHHHHHHHHHT--GGGGGGEEEEE	aaaaaaaaaaaaaaabbaaaaaabbxbx
1m6j_A_146	1m6j	A	146	173	TEEVVAAQLKAINNAISKEAWKNIILAY	HHHHHHHHHHHHHHHS-TGGGGGEEEEE	aaaaaaaaaaaaaaabxaaaaaabbxbx
1n55_A_139	1n55	A	139	166	TAKVVLSQTSAIAAKLTKDAWNQVVLAY	HHHHHHHHHHHHHTT--GGGGGGEEEEE	aaaaaaaaaaaaaaabxaaaaaabbxbx
1tcd_A_140	1tcd	A	140	167	TAAVVLTQLAAVAQKLSKEAWSRVVIAY	HHHHHHHHHHHHHTT--GGGGGGEEEEE	aaaaaaaaaaaaaaaxbaaaaaaxbbbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Clusters included in this Subclass