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Information on SUBCLASS 8.17.1
Subclass Accession number: 8730
Subclass: 8.17.1 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 60.4 +/- -6.0
Average RMSD (Å) : 0.167 +/- 0.058

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: DFhhpXXXNhhH
(φψ)-conformation: aababaabaUbb
Pattern: [I][R][G][D][F][ACG][ILV][DEQ][TV][GQ][FR][N][IL][IV][H][G]
Conservation:-0.0480.4380.9230.9230.923-1.288-0.695-0.695-0.910-1.104-1.3880.923-0.529-0.2891.8940.923
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1k44_A_1031k44   A103118IRGDFALETQFNLVHGHHHHH---STT--EEEaaaaababaabaUbbb
1npk_*_1081npk   -108123IRGDFGVDVGRNIIHGHHHHH--BTTB--EEEaaaaababaabagbbb
1nue_A_1041nue   A104119IRGDFCIQVGRNIIHGHHHHH---GGG--EEEaaaaababaabaUbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1nue_A_1041nue   A     GDPGUANOSINE-5'-DIPHOSPHATE R - 105
1nue_A_1041nue   A     GDPGUANOSINE-5'-DIPHOSPHATE V - 112
1nue_A_1041nue   A     GDPGUANOSINE-5'-DIPHOSPHATE G - 113
1nue_A_1041nue   A     GDPGUANOSINE-5'-DIPHOSPHATE R - 114
1nue_A_1041nue   A     GDPGUANOSINE-5'-DIPHOSPHATE N - 115
1nue_A_1041nue   A     GDPGUANOSINE-5'-DIPHOSPHATE I - 117
1nue_A_1041nue   A     GDPGUANOSINE-5'-DIPHOSPHATE H - 118
1nue_A_1041nue   A     MGMAGNESIUM ION H - 118
1nue_A_1041nue   A     GDPGUANOSINE-5'-DIPHOSPHATE G - 119

Clusters included in this Subclass
CLUSTER: HE.7.90