Information on SUBCLASS 8.17.1 |
Subclass Accession number: 8730
Subclass: 8.17.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 60.4 +/- -6.0 Average RMSD (Å) : 0.167 +/- 0.058 Consensus geometry
|
Consensus Sequence: | DFhhpXXXNhhH |
(φψ)-conformation: | aababaabaUbb |
Pattern: | [I] | [R] | [G] | [D] | [F] | [ACG] | [ILV] | [DEQ] | [TV] | [GQ] | [FR] | [N] | [IL] | [IV] | [H] | [G] |
Conservation: | -0.048 | 0.438 | 0.923 | 0.923 | 0.923 | -1.288 | -0.695 | -0.695 | -0.910 | -1.104 | -1.388 | 0.923 | -0.529 | -0.289 | 1.894 | 0.923 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1k44_A_103 | 1k44 | A | 103 | 118 | IRGDFALETQFNLVHG | HHHHH---STT--EEE | aaaaababaabaUbbb |
1npk_*_108 | 1npk | - | 108 | 123 | IRGDFGVDVGRNIIHG | HHHHH--BTTB--EEE | aaaaababaabagbbb |
1nue_A_104 | 1nue | A | 104 | 119 | IRGDFCIQVGRNIIHG | HHHHH---GGG--EEE | aaaaababaabaUbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1nue_A_104 | 1nue | A | GDPGUANOSINE-5'-DIPHOSPHATE | R - 105 |
1nue_A_104 | 1nue | A | GDPGUANOSINE-5'-DIPHOSPHATE | V - 112 |
1nue_A_104 | 1nue | A | GDPGUANOSINE-5'-DIPHOSPHATE | G - 113 |
1nue_A_104 | 1nue | A | GDPGUANOSINE-5'-DIPHOSPHATE | R - 114 |
1nue_A_104 | 1nue | A | GDPGUANOSINE-5'-DIPHOSPHATE | N - 115 |
1nue_A_104 | 1nue | A | GDPGUANOSINE-5'-DIPHOSPHATE | I - 117 |
1nue_A_104 | 1nue | A | GDPGUANOSINE-5'-DIPHOSPHATE | H - 118 |
1nue_A_104 | 1nue | A | MGMAGNESIUM ION | H - 118 |
1nue_A_104 | 1nue | A | GDPGUANOSINE-5'-DIPHOSPHATE | G - 119 |
Clusters included in this Subclass |
CLUSTER: HE.7.90 |