PDB: 1gpp Compound: endonuclease pi-scei Classification: ENDONUCLEASE Entry date in PDB: 2002-09-19 Resolution [Å]: 1.35 R-Factor: 0.153

CHAIN: A SWISS-PROT/TREMBL: P17255    KEYWORD: 3D-structure    ATP synthesis    ATP-binding    Autocatalytic cleavage    DNA-binding    Endonuclease    Hydrogen ion transport    Hydrolase    Intron homing    Nuclease    Protein splicing    EC: 3.6.3.14 SCOP: b.86.1.2 All beta proteins    Hedgehog/intein (Hint) domain    Hedgehog/intein (Hint) domain    Intein (protein splicing domain)    VMA1-derived endonuclease (VDE) PI-Scei intein    Baker's yeast (Saccharomyces cerevisiae) GO:  proton-transporting two-sector ATPase complex    ATP binding    DNA binding    endonuclease activity    hydrogen-transporting ATP synthase activity, rotational mechanism    hydrogen-transporting ATPase activity, rotational mechanism    ATP biosynthesis    ATP synthesis coupled proton transport    intein-mediated protein splicing    protein splicing

Image Source: PDB

Loops in ArchDB40 clusters

1gpp_A_89 - HA => SUBCLASS : 2.4.15
1gpp_A_7 - HA => SUBCLASS : 3.1.1
1gpp_A_444 - HA => SUBCLASS : 3.1.1
1gpp_A_26 - HA => SUBCLASS : 3.1.1
1gpp_A_99 - HA => SUBCLASS : 5.1.6
1gpp_A_72 - AR => SUBCLASS : 3.7.1
1gpp_A_15 - AR => SUBCLASS : 8.5.1

Loops in ArchDB95 clusters

1gpp_A_72 - AR => SUBCLASS : 2.2.1
1gpp_A_15 - AR => SUBCLASS : 8.9.1
1gpp_A_89 - HA => SUBCLASS : 2.5.13
1gpp_A_7 - HA => SUBCLASS : 3.1.1
1gpp_A_444 - HA => SUBCLASS : 3.1.1
1gpp_A_26 - HA => SUBCLASS : 3.1.1
1gpp_A_99 - HA => SUBCLASS : 5.1.3

Loops in ArchDB-EC clusters

1gpp_A_169 - HE => SUBCLASS : 2.5.10

Loops not clustered in ArchDB

1gpp_A_80 - AR
1gpp_A_72 - AR
1gpp_A_34 - AR
1gpp_A_15 - AR
1gpp_A_435 - AR
1gpp_A_421 - AR
1gpp_A_417 - AR
1gpp_A_417 - AR
1gpp_A_80 - AR
1gpp_A_421 - AR
1gpp_A_34 - AR
1gpp_A_435 - AR
1gpp_A_154 - EH
1gpp_A_119 - EH
1gpp_A_89 - HA
1gpp_A_177 - HA
1gpp_A_99 - HA
1gpp_A_42 - HA
1gpp_A_26 - HA
1gpp_A_7 - HA
1gpp_A_177 - HA
1gpp_A_42 - HA
1gpp_A_444 - HA
1gpp_A_137 - HE

1ef0 A - percentage of sequence identity: 97
1ef0 B - percentage of sequence identity: 97
1jva B - percentage of sequence identity: 97
1lws A - percentage of sequence identity: 97
1lwt A - percentage of sequence identity: 97
1um2 A - percentage of sequence identity: 97
1um2 B - percentage of sequence identity: 97
1vde A - percentage of sequence identity: 97
1vde B - percentage of sequence identity: 97