PDB: 1jy1 Compound: tyrosyl-DNA phosphodiesterase Classification: HYDROLASE Entry date in PDB: 2002-02-20 Resolution [Å]: 1.69 R-Factor: 0.198

CHAIN: A SWISS-PROT/TREMBL: Q9NUW8    KEYWORD: 3D-structure    Disease mutation    DNA repair    Hydrolase    Nuclear protein    Repeat    EC: 3.1.4.- SCOP: d.136.1.3 Alpha and beta proteins (a+b)    Phospholipase D/nuclease    Phospholipase D/nuclease    Tyrosyl-DNA phosphodiesterase TDP1    Tyrosyl-DNA phosphodiesterase TDP1    Human (Homo sapiens) SCOP: d.136.1.3 Alpha and beta proteins (a+b)    Phospholipase D/nuclease    Phospholipase D/nuclease    Tyrosyl-DNA phosphodiesterase TDP1    Tyrosyl-DNA phosphodiesterase TDP1    Human (Homo sapiens) GO:  nucleus    phosphoric diester hydrolase activity    DNA repair

Image Source: PDB

Loops in ArchDB40 clusters

1jy1_A_232 - HE => SUBCLASS : 4.1.2
1jy1_A_232 - HE => SUBCLASS : 4.1.4
1jy1_A_269 - HA => SUBCLASS : 3.8.2
1jy1_A_437 - EH => SUBCLASS : 2.3.3
1jy1_A_196 - EH => SUBCLASS : 4.11.4
1jy1_A_506 - AR => SUBCLASS : 1.1.5
1jy1_A_506 - AR => SUBCLASS : 1.1.6

Loops in ArchDB95 clusters

1jy1_A_437 - EH => SUBCLASS : 0.1.17
1jy1_A_437 - EH => SUBCLASS : 2.2.8
1jy1_A_196 - EH => SUBCLASS : 4.4.6
1jy1_A_506 - AR => SUBCLASS : 1.2.11
1jy1_A_232 - HE => SUBCLASS : 3.4.12
1jy1_A_232 - HE => SUBCLASS : 3.6.10
1jy1_A_232 - HE => SUBCLASS : 4.1.3
1jy1_A_269 - HA => SUBCLASS : 3.12.4

Loops in ArchDB-EC clusters

1jy1_A_208 - HE => SUBCLASS : 9.8.1

Loops not clustered in ArchDB

1jy1_A_538 - AR
1jy1_A_248 - AR
1jy1_A_477 - AR
1jy1_A_495 - AR
1jy1_A_506 - AR
1jy1_A_538 - AR
1jy1_A_275 - AR
1jy1_A_248 - AR
1jy1_A_477 - AR
1jy1_A_495 - AR
1jy1_A_275 - AR
1jy1_A_166 - EH
1jy1_A_510 - EH
1jy1_A_353 - EH
1jy1_A_295 - EH
1jy1_A_224 - EH
1jy1_A_278 - HA
1jy1_A_269 - HA
1jy1_A_394 - HA
1jy1_A_553 - HA
1jy1_A_394 - HA
1jy1_A_553 - HA
1jy1_A_278 - HA
1jy1_A_519 - HE
1jy1_A_371 - HE
1jy1_A_336 - HE
1jy1_A_185 - HE
1jy1_A_464 - HE
1jy1_A_444 - HH
1jy1_A_319 - HH

1mu7 A - percentage of sequence identity: 100
1mu7 B - percentage of sequence identity: 100
1mu9 A - percentage of sequence identity: 100
1mu9 B - percentage of sequence identity: 100
1nop A - percentage of sequence identity: 100
1nop B - percentage of sequence identity: 100
1qzq B - percentage of sequence identity: 99
1rff A - percentage of sequence identity: 100
1rff B - percentage of sequence identity: 100
1rfi A - percentage of sequence identity: 100
1rfi B - percentage of sequence identity: 100
1rg1 A - percentage of sequence identity: 100
1rg1 B - percentage of sequence identity: 100
1rg2 A - percentage of sequence identity: 100
1rg2 B - percentage of sequence identity: 100
1rgt A - percentage of sequence identity: 100
1rgt B - percentage of sequence identity: 100
1rgu A - percentage of sequence identity: 100
1rgu B - percentage of sequence identity: 100
1rh0 A - percentage of sequence identity: 100
1rh0 B - percentage of sequence identity: 100