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Information on 1m5s
PDB: 1m5s
Compound: formylmethanofuran--tetrahydromethanopterin formyl
Classification: TRANSFERASE
Entry date in PDB: 2002-07-26
Resolution [Å]: 1.85
R-Factor: 0.197


CHAIN: A
SWISS-PROT/TREMBL: P55301
   KEYWORD: 3D-structure    Acyltransferase    Methanogenesis    One-carbon metabolism    Transferase   
EC: 2.3.1.101
SCOP: d.58.33.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Archaeon Methanosarcina barkeri
SCOP: d.58.33.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Archaeon Methanosarcina barkeri
GO:  transferase activity    methanogenesis   


CHAIN: B
SWISS-PROT/TREMBL: P55301
   KEYWORD: 3D-structure    Acyltransferase    Methanogenesis    One-carbon metabolism    Transferase   
EC: 2.3.1.101
SCOP: d.58.33.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Archaeon Methanosarcina barkeri
SCOP: d.58.33.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Archaeon Methanosarcina barkeri
GO:  transferase activity    methanogenesis   


CHAIN: C
SWISS-PROT/TREMBL: P55301
   KEYWORD: 3D-structure    Acyltransferase    Methanogenesis    One-carbon metabolism    Transferase   
EC: 2.3.1.101
SCOP: d.58.33.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Archaeon Methanosarcina barkeri
SCOP: d.58.33.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Archaeon Methanosarcina barkeri
GO:  transferase activity    methanogenesis   


CHAIN: D
SWISS-PROT/TREMBL: P55301
   KEYWORD: 3D-structure    Acyltransferase    Methanogenesis    One-carbon metabolism    Transferase   
EC: 2.3.1.101
SCOP: d.58.33.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Archaeon Methanosarcina barkeri
SCOP: d.58.33.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Archaeon Methanosarcina barkeri
GO:  transferase activity    methanogenesis   
1m5s Image
Image Source: PDB

Stored Loops of 1m5s

Loops in ArchDB95 clusters

1m5s_A_113 - EH => SUBCLASS : 0.1.13
1m5s_A_113 - EH => SUBCLASS : 0.1.21
1m5s_A_71 - EH => SUBCLASS : 2.1.1
1m5s_A_12 - EH => SUBCLASS : 2.1.38
1m5s_A_274 - AR => SUBCLASS : 7.33.1
1m5s_A_173 - HE => SUBCLASS : 3.7.1
1m5s_A_173 - HE => SUBCLASS : 3.7.2
1m5s_A_254 - HE => SUBCLASS : 3.7.2
1m5s_A_81 - HE => SUBCLASS : 4.30.2
1m5s_A_130 - HA => SUBCLASS : 2.1.3
1m5s_A_130 - HA => SUBCLASS : 2.1.6
1m5s_A_137 - HA => SUBCLASS : 2.2.2

Loops in ArchDB-EC clusters

1m5s_A_81 - HE => SUBCLASS : 4.23.1

Loops not clustered in ArchDB

1m5s_A_274 - AR
1m5s_A_147 - AR
1m5s_A_103 - AR
1m5s_A_6 - AR
1m5s_A_6 - AR
1m5s_A_147 - AR
1m5s_A_103 - AR
1m5s_A_155 - EH
1m5s_A_243 - EH
1m5s_A_53 - HA
1m5s_A_193 - HA
1m5s_A_137 - HA
1m5s_A_130 - HA
1m5s_A_193 - HA
1m5s_A_53 - HA
1m5s_A_2 - HA
1m5s_A_2 - HA
1m5s_A_117 - HE
1m5s_A_30 - HE

Homologous structures to 1m5s classified in ArchDB

1m5h A - percentage of sequence identity: 68
1m5h B - percentage of sequence identity: 68
1m5h C - percentage of sequence identity: 68
1m5h D - percentage of sequence identity: 68
1m5h E - percentage of sequence identity: 68
1m5h F - percentage of sequence identity: 68
1m5h G - percentage of sequence identity: 68
1m5h H - percentage of sequence identity: 68
1m5s A - percentage of sequence identity: 100
1m5s B - percentage of sequence identity: 100
1m5s C - percentage of sequence identity: 100
1m5s D - percentage of sequence identity: 100