Information on 1pdn |
PDB: 1pdn Compound: prd paired domain Classification: COMPLEX (GENE REGULATING PROTEIN/DNA) Entry date in PDB: 1995-07-31 Resolution [Å]: 2.50 R-Factor: 0.234 |
CHAIN: C SWISS-PROT/TREMBL:
P06601
KEYWORD: 3D-structure Alternative splicing Developmental protein DNA-binding Homeobox Nuclear protein Pair-rule protein Paired box Repeat Transcription regulation SCOP: a.4.1.5 All alpha proteins DNA/RNA-binding 3-helical bundle Homeodomain-like Paired domain Paired protein (prd) Fruit fly (Drosophila melanogaster) GO: nucleus DNA binding transcription factor activity development regulation of transcription regulation of transcription, DNA-dependent |
Image Source: PDB |
Stored Loops of 1pdn |
Loops in ArchDB40 clusters
1pdn_C_36 - HH => SUBCLASS : 3.1.1
1pdn_C_20 - HH => SUBCLASS : 3.3.1
Loops in ArchDB95 clusters
1pdn_C_20 - HH => SUBCLASS : 3.2.1
1pdn_C_96 - HH => SUBCLASS : 10.18.1
Loops not clustered in ArchDB
1pdn_C_11 - EH
1pdn_C_3 - HA
1pdn_C_47 - HH
1pdn_C_80 - HH
Homologous structures to 1pdn classified in ArchDB |
1k78 E - percentage of sequence identity: 66
1k78 I - percentage of sequence identity: 66
1mdm A - percentage of sequence identity: 66