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Information on 1v54
PDB: 1v54
Compound: cytochrome c oxidase polypeptide i
Classification: OXIDOREDUCTASE
Entry date in PDB: 2003-12-23
Resolution [Å]: 1.80
R-Factor: 0.202


CHAIN: A
SWISS-PROT/TREMBL: P00396
   KEYWORD: 3D-structure    Copper    Formylation    Heme    Inner membrane    Mitochondrion    Oxidoreductase    Respiratory chain    Transmembrane   
EC: 1.9.3.1
SCOP: f.24.1.1 Membrane and cell surface proteins and peptides    Cytochrome c oxidase subunit I-like    Cytochrome c oxidase subunit I-like    Cytochrome c oxidase subunit I-like    Mitochondrial cytochrome c oxidase, subunit I    Cow (Bos taurus)
GO:  membrane    cytochrome-c oxidase activity    electron transport   


CHAIN: B
SWISS-PROT/TREMBL: P00404
   KEYWORD: 3D-structure    Copper    Electron transport    Formylation    Inner membrane    Mitochondrion    Oxidoreductase    Respiratory chain    Transmembrane   
EC: 1.9.3.1
SCOP: b.6.1.2 All beta proteins    Cupredoxin-like    Cupredoxins    Periplasmic domain of cytochrome c oxidase subunit II    Cytochrome c oxidase    Cow (Bos taurus)
SCOP: f.17.2.1 Membrane and cell surface proteins and peptides    Transmembrane helix hairpin    Cytochrome c oxidase subunit II-like, transmembrane region    Cytochrome c oxidase subunit II-like, transmembrane region    Mitochondrial cytochrome c oxidase, subunit II    Cow (Bos taurus)
GO:  inner membrane    integral to membrane    membrane    copper ion binding    cytochrome-c oxidase activity    electron transport   


CHAIN: C
SWISS-PROT/TREMBL: P00415
   KEYWORD: 3D-structure    Inner membrane    Mitochondrion    Oxidoreductase    Transmembrane   
EC: 1.9.3.1
SCOP: f.25.1.1 Membrane and cell surface proteins and peptides    Cytochrome c oxidase subunit III-like    Cytochrome c oxidase subunit III-like    Cytochrome c oxidase subunit III-like    Mitochondrial cytochrome c oxidase, subunit III    Cow (Bos taurus)
GO:  membrane    cytochrome-c oxidase activity    electron transport   


CHAIN: D
SWISS-PROT/TREMBL: P00423
   KEYWORD: 3D-structure    Inner membrane    Mitochondrion    Oxidoreductase    Transit peptide    Transmembrane   
EC: 1.9.3.1
SCOP: f.23.1.1 Membrane and cell surface proteins and peptides    Single transmembrane helix    Mitochondrial cytochrome c oxidase subunit IV    Mitochondrial cytochrome c oxidase subunit IV    Mitochondrial cytochrome c oxidase subunit IV    Cow (Bos taurus)
GO:  cytochrome-c oxidase activity    electron transport   


CHAIN: E
SWISS-PROT/TREMBL: P00426
   KEYWORD: 3D-structure    Heme    Inner membrane    Mitochondrion    Oxidoreductase   
EC: 1.9.3.1
SCOP: a.118.11.1 All alpha proteins    alpha-alpha superhelix    Cytochrome c oxidase subunit E    Cytochrome c oxidase subunit E    Cytochrome c oxidase subunit E    Cow (Bos taurus)
GO:  cytochrome-c oxidase activity    electron transport   


CHAIN: F
SWISS-PROT/TREMBL: P00428
   KEYWORD: 3D-structure    Inner membrane    Mitochondrion    Oxidoreductase   
EC: 1.9.3.1
SCOP: g.41.5.3 Small proteins    Rubredoxin-like    Rubredoxin-like    Cytochrome c oxidase Subunit F    Cytochrome c oxidase Subunit F    Cow (Bos taurus)
GO:  mitochondrial membrane    cytochrome-c oxidase activity    electron transport   


CHAIN: G
SWISS-PROT/TREMBL: P07471
   KEYWORD: 3D-structure    Inner membrane    Mitochondrion    Oxidoreductase    Transit peptide    Transmembrane   
EC: 1.9.3.1
SCOP: f.23.2.1 Membrane and cell surface proteins and peptides    Single transmembrane helix    Mitochondrial cytochrome c oxidase subunit VIa    Mitochondrial cytochrome c oxidase subunit VIa    Mitochondrial cytochrome c oxidase subunit VIa    Cow (Bos taurus)
GO:  mitochondrial membrane    cytochrome-c oxidase activity    electron transport   


CHAIN: H
SWISS-PROT/TREMBL: P00429
   KEYWORD: 3D-structure    Acetylation    Mitochondrion    Oxidoreductase   
EC: 1.9.3.1
SCOP: a.51.1.1 All alpha proteins    Cytochrome c oxidase subunit h    Cytochrome c oxidase subunit h    Cytochrome c oxidase subunit h    Cytochrome c oxidase subunit h    Cow (Bos taurus)
GO:  mitochondrion    cytochrome-c oxidase activity    electron transport   


CHAIN: I
SWISS-PROT/TREMBL: P04038
   KEYWORD: 3D-structure    Inner membrane    Mitochondrion    Oxidoreductase    Transmembrane   
EC: 1.9.3.1
SCOP: f.23.3.1 Membrane and cell surface proteins and peptides    Single transmembrane helix    Mitochondrial cytochrome c oxidase subunit VIc    Mitochondrial cytochrome c oxidase subunit VIc    Mitochondrial cytochrome c oxidase subunit VIc    Cow (Bos taurus)
GO:  cytochrome-c oxidase activity    electron transport   


CHAIN: J
SWISS-PROT/TREMBL: P07470
   KEYWORD: 3D-structure    Inner membrane    Mitochondrion    Oxidoreductase    Transit peptide    Transmembrane   
EC: 1.9.3.1
SCOP: f.23.4.1 Membrane and cell surface proteins and peptides    Single transmembrane helix    Mitochondrial cytochrome c oxidase subunit VIIa    Mitochondrial cytochrome c oxidase subunit VIIa    Mitochondrial cytochrome c oxidase subunit VIIa    Cow (Bos taurus)
GO:  cytochrome-c oxidase activity    electron transporter activity    electron transport   


CHAIN: K
SWISS-PROT/TREMBL: P13183
   KEYWORD: 3D-structure    Inner membrane    Mitochondrion    Oxidoreductase    Transit peptide    Transmembrane   
EC: 1.9.3.1
SCOP: f.23.5.1 Membrane and cell surface proteins and peptides    Single transmembrane helix    Mitochondrial cytochrome c oxidase subunit VIIb    Mitochondrial cytochrome c oxidase subunit VIIb    Mitochondrial cytochrome c oxidase subunit VIIb    Cow (Bos taurus)
GO:  mitochondrial electron transport chain    cytochrome-c oxidase activity    electron transport   


CHAIN: L
SWISS-PROT/TREMBL: P00430
   KEYWORD: 3D-structure    Inner membrane    Mitochondrion    Oxidoreductase    Transit peptide    Transmembrane   
EC: 1.9.3.1
SCOP: f.23.6.1 Membrane and cell surface proteins and peptides    Single transmembrane helix    Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)    Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)    Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)    Cow (Bos taurus)
GO:  cytochrome-c oxidase activity    electron transport   


CHAIN: M
SWISS-PROT/TREMBL: P10175
   KEYWORD: 3D-structure    Inner membrane    Mitochondrion    Oxidoreductase    Transit peptide    Transmembrane   
EC: 1.9.3.1
SCOP: f.23.7.1 Membrane and cell surface proteins and peptides    Single transmembrane helix    Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)    Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)    Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)    Cow (Bos taurus)
GO:  cytochrome-c oxidase activity    electron transport   


CHAIN: N
SWISS-PROT/TREMBL: P00396
   KEYWORD: 3D-structure    Copper    Formylation    Heme    Inner membrane    Mitochondrion    Oxidoreductase    Respiratory chain    Transmembrane   
EC: 1.9.3.1
SCOP: f.24.1.1 Membrane and cell surface proteins and peptides    Cytochrome c oxidase subunit I-like    Cytochrome c oxidase subunit I-like    Cytochrome c oxidase subunit I-like    Mitochondrial cytochrome c oxidase, subunit I    Cow (Bos taurus)
GO:  membrane    cytochrome-c oxidase activity    electron transport   


CHAIN: O
SWISS-PROT/TREMBL: P00404
   KEYWORD: 3D-structure    Copper    Electron transport    Formylation    Inner membrane    Mitochondrion    Oxidoreductase    Respiratory chain    Transmembrane   
EC: 1.9.3.1
SCOP: b.6.1.2 All beta proteins    Cupredoxin-like    Cupredoxins    Periplasmic domain of cytochrome c oxidase subunit II    Cytochrome c oxidase    Cow (Bos taurus)
SCOP: f.17.2.1 Membrane and cell surface proteins and peptides    Transmembrane helix hairpin    Cytochrome c oxidase subunit II-like, transmembrane region    Cytochrome c oxidase subunit II-like, transmembrane region    Mitochondrial cytochrome c oxidase, subunit II    Cow (Bos taurus)
GO:  inner membrane    integral to membrane    membrane    copper ion binding    cytochrome-c oxidase activity    electron transport   


CHAIN: P
SWISS-PROT/TREMBL: P00415
   KEYWORD: 3D-structure    Inner membrane    Mitochondrion    Oxidoreductase    Transmembrane   
EC: 1.9.3.1
SCOP: f.25.1.1 Membrane and cell surface proteins and peptides    Cytochrome c oxidase subunit III-like    Cytochrome c oxidase subunit III-like    Cytochrome c oxidase subunit III-like    Mitochondrial cytochrome c oxidase, subunit III    Cow (Bos taurus)
GO:  membrane    cytochrome-c oxidase activity    electron transport   


CHAIN: Q
SWISS-PROT/TREMBL: P00423
   KEYWORD: 3D-structure    Inner membrane    Mitochondrion    Oxidoreductase    Transit peptide    Transmembrane   
EC: 1.9.3.1
SCOP: f.23.1.1 Membrane and cell surface proteins and peptides    Single transmembrane helix    Mitochondrial cytochrome c oxidase subunit IV    Mitochondrial cytochrome c oxidase subunit IV    Mitochondrial cytochrome c oxidase subunit IV    Cow (Bos taurus)
GO:  cytochrome-c oxidase activity    electron transport   


CHAIN: R
SWISS-PROT/TREMBL: P00426
   KEYWORD: 3D-structure    Heme    Inner membrane    Mitochondrion    Oxidoreductase   
EC: 1.9.3.1
SCOP: a.118.11.1 All alpha proteins    alpha-alpha superhelix    Cytochrome c oxidase subunit E    Cytochrome c oxidase subunit E    Cytochrome c oxidase subunit E    Cow (Bos taurus)
GO:  cytochrome-c oxidase activity    electron transport   


CHAIN: S
SWISS-PROT/TREMBL: P00428
   KEYWORD: 3D-structure    Inner membrane    Mitochondrion    Oxidoreductase   
EC: 1.9.3.1
SCOP: g.41.5.3 Small proteins    Rubredoxin-like    Rubredoxin-like    Cytochrome c oxidase Subunit F    Cytochrome c oxidase Subunit F    Cow (Bos taurus)
GO:  mitochondrial membrane    cytochrome-c oxidase activity    electron transport   


CHAIN: T
SWISS-PROT/TREMBL: P07471
   KEYWORD: 3D-structure    Inner membrane    Mitochondrion    Oxidoreductase    Transit peptide    Transmembrane   
EC: 1.9.3.1
SCOP: f.23.2.1 Membrane and cell surface proteins and peptides    Single transmembrane helix    Mitochondrial cytochrome c oxidase subunit VIa    Mitochondrial cytochrome c oxidase subunit VIa    Mitochondrial cytochrome c oxidase subunit VIa    Cow (Bos taurus)
GO:  mitochondrial membrane    cytochrome-c oxidase activity    electron transport   


CHAIN: U
SWISS-PROT/TREMBL: P00429
   KEYWORD: 3D-structure    Acetylation    Mitochondrion    Oxidoreductase   
EC: 1.9.3.1
SCOP: a.51.1.1 All alpha proteins    Cytochrome c oxidase subunit h    Cytochrome c oxidase subunit h    Cytochrome c oxidase subunit h    Cytochrome c oxidase subunit h    Cow (Bos taurus)
GO:  mitochondrion    cytochrome-c oxidase activity    electron transport   


CHAIN: V
SWISS-PROT/TREMBL: P04038
   KEYWORD: 3D-structure    Inner membrane    Mitochondrion    Oxidoreductase    Transmembrane   
EC: 1.9.3.1
SCOP: f.23.3.1 Membrane and cell surface proteins and peptides    Single transmembrane helix    Mitochondrial cytochrome c oxidase subunit VIc    Mitochondrial cytochrome c oxidase subunit VIc    Mitochondrial cytochrome c oxidase subunit VIc    Cow (Bos taurus)
GO:  cytochrome-c oxidase activity    electron transport   


CHAIN: W
SWISS-PROT/TREMBL: P07470
   KEYWORD: 3D-structure    Inner membrane    Mitochondrion    Oxidoreductase    Transit peptide    Transmembrane   
EC: 1.9.3.1
SCOP: f.23.4.1 Membrane and cell surface proteins and peptides    Single transmembrane helix    Mitochondrial cytochrome c oxidase subunit VIIa    Mitochondrial cytochrome c oxidase subunit VIIa    Mitochondrial cytochrome c oxidase subunit VIIa    Cow (Bos taurus)
GO:  cytochrome-c oxidase activity    electron transporter activity    electron transport   


CHAIN: X
SWISS-PROT/TREMBL: P13183
   KEYWORD: 3D-structure    Inner membrane    Mitochondrion    Oxidoreductase    Transit peptide    Transmembrane   
EC: 1.9.3.1
SCOP: f.23.5.1 Membrane and cell surface proteins and peptides    Single transmembrane helix    Mitochondrial cytochrome c oxidase subunit VIIb    Mitochondrial cytochrome c oxidase subunit VIIb    Mitochondrial cytochrome c oxidase subunit VIIb    Cow (Bos taurus)
GO:  mitochondrial electron transport chain    cytochrome-c oxidase activity    electron transport   


CHAIN: Y
SWISS-PROT/TREMBL: P00430
   KEYWORD: 3D-structure    Inner membrane    Mitochondrion    Oxidoreductase    Transit peptide    Transmembrane   
EC: 1.9.3.1
SCOP: f.23.6.1 Membrane and cell surface proteins and peptides    Single transmembrane helix    Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)    Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)    Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)    Cow (Bos taurus)
GO:  cytochrome-c oxidase activity    electron transport   


CHAIN: Z
SWISS-PROT/TREMBL: P10175
   KEYWORD: 3D-structure    Inner membrane    Mitochondrion    Oxidoreductase    Transit peptide    Transmembrane   
EC: 1.9.3.1
SCOP: f.23.7.1 Membrane and cell surface proteins and peptides    Single transmembrane helix    Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)    Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)    Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)    Cow (Bos taurus)
GO:  cytochrome-c oxidase activity    electron transport   
1v54 Image
Image Source: PDB

Stored Loops of 1v54

Loops in ArchDB40 clusters

1v54_B_95 - HA => SUBCLASS : 2.5.2
1v54_D_138 - HA => SUBCLASS : 4.1.1
1v54_B_161 - HA => SUBCLASS : 4.1.5
1v54_F_80 - HA => SUBCLASS : 6.1.1
1v54_F_55 - HA => SUBCLASS : 8.9.1
1v54_B_142 - AR => SUBCLASS : 3.1.2
1v54_B_170 - AR => SUBCLASS : 4.13.1
1v54_A_336 - HH => SUBCLASS : 1.1.3
1v54_A_336 - HH => SUBCLASS : 1.1.4
1v54_H_54 - HH => SUBCLASS : 2.1.3
1v54_I_40 - HH => SUBCLASS : 2.1.10
1v54_I_40 - HH => SUBCLASS : 2.1.22
1v54_C_129 - HH => SUBCLASS : 2.2.1
1v54_C_16 - HH => SUBCLASS : 2.2.12
1v54_E_45 - HH => SUBCLASS : 2.4.3
1v54_F_9 - HH => SUBCLASS : 2.5.1
1v54_I_40 - HH => SUBCLASS : 2.11.1
1v54_C_41 - HH => SUBCLASS : 4.5.3
1v54_A_384 - HH => SUBCLASS : 5.1.2
1v54_E_8 - HH => SUBCLASS : 5.4.2

Loops in ArchDB95 clusters

1v54_B_142 - AR => SUBCLASS : 3.5.1
1v54_B_170 - AR => SUBCLASS : 4.9.1
1v54_A_336 - HH => SUBCLASS : 1.1.1
1v54_H_54 - HH => SUBCLASS : 2.1.1
1v54_C_129 - HH => SUBCLASS : 2.2.1
1v54_C_16 - HH => SUBCLASS : 2.2.14
1v54_H_54 - HH => SUBCLASS : 2.3.1
1v54_F_9 - HH => SUBCLASS : 2.4.1
1v54_E_45 - HH => SUBCLASS : 2.5.5
1v54_A_361 - HH => SUBCLASS : 3.11.3
1v54_A_384 - HH => SUBCLASS : 5.1.3
1v54_E_8 - HH => SUBCLASS : 5.3.3
1v54_B_95 - HA => SUBCLASS : 3.11.1
1v54_F_80 - HA => SUBCLASS : 4.1.1
1v54_D_138 - HA => SUBCLASS : 4.1.1
1v54_B_161 - HA => SUBCLASS : 4.1.7
1v54_F_55 - HA => SUBCLASS : 8.20.1

Loops not clustered in ArchDB

1v54_F_47 - AR
1v54_B_116 - AR
1v54_B_150 - AR
1v54_B_180 - AR
1v54_F_70 - AR
1v54_B_209 - EH
1v54_B_190 - HA
1v54_B_105 - HA
1v54_F_15 - HE
1v54_D_113 - HE
1v54_B_61 - HE
1v54_A_95 - HH
1v54_A_105 - HH
1v54_A_142 - HH
1v54_A_183 - HH
1v54_A_228 - HH
1v54_A_270 - HH
1v54_A_299 - HH
1v54_A_313 - HH
1v54_A_371 - HH
1v54_A_407 - HH
1v54_A_427 - HH
1v54_C_73 - HH
1v54_C_156 - HH
1v54_C_191 - HH
1v54_A_77 - HH
1v54_A_70 - HH
1v54_A_51 - HH
1v54_E_26 - HH
1v54_E_61 - HH
1v54_B_15 - HH
1v54_D_35 - HH
1v54_D_53 - HH
1v54_D_68 - HH
1v54_D_77 - HH
1v54_G_13 - HH
1v54_I_12 - HH
1v54_J_5 - HH
1v54_M_12 - HH
1v54_A_3 - HH
1v54_A_12 - HH
1v54_H_26 - HH

Homologous structures to 1v54 classified in ArchDB

1occ B - percentage of sequence identity: 100
1occ O - percentage of sequence identity: 100
1oco B - percentage of sequence identity: 100
1oco O - percentage of sequence identity: 100
1ocr B - percentage of sequence identity: 100
1ocr O - percentage of sequence identity: 100
1ocz B - percentage of sequence identity: 100
1ocz O - percentage of sequence identity: 100
1v54 B - percentage of sequence identity: 100
1v54 O - percentage of sequence identity: 100
1v55 B - percentage of sequence identity: 100
1v55 O - percentage of sequence identity: 100
2occ B - percentage of sequence identity: 100
2occ O - percentage of sequence identity: 100
null nu - percentage of sequence identity: 0