Information on SUBCLASS 5.5.1 |
Subclass Accession number: 2449
Subclass: 5.5.1 ![]() Type: HH alpha-alpha DB: ArchDB40 Image coordinates: ![]() ![]() Consensus coordinates: ![]() ![]() Conserved Annotation GO : GO:0005344 (>50 %) SCOP : 46457 (>50 %) 46458 (>50 %) 46463 (>50 %) |
Number of loops: 9 Average sequence ID (%) : 15.1 +/- 14.7 Average RMSD (Å) : 0.678 +/- 0.282 Consensus geometry
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Consensus Sequence: | hXGXXXpXX |
(φψ)-conformation: | aalababaa |
Pattern: | [agilvw] | [acgy] | x | [aglwy] | [FGLT] | [fltvwy] | [ail] | x | [DGR] | x | x | x | [DKNST] | x | [ADEKQRT] | [adeq] | [ACGL] | x |
Conservation: | -0.645 | -0.554 | -0.013 | -0.852 | -0.425 | -0.178 | 0.560 | -0.017 | 3.007 | -1.153 | -0.163 | -0.727 | 1.250 | -0.919 | 0.109 | 1.170 | 0.094 | -0.545 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bu6_O_438 | 1bu6 | O | 444 | 461 | AYLAGLAVGFWQNLDELQ | HHHHHHHTTSS--HHHHH | aaaaaaaavababaaaaa |
1d5r_A_129 | 1d5r | A | 135 | 152 | ICAYLLHRGKFLKAQEAL | HHHHHHHHTS-SSHHHHH | aaaaaaaagababaaaaa |
1dm9_A_11 | 1dm9 | A | 11 | 28 | LDKWLWAARFYKTRALAR | HHHHHHHTTSSSSHHHHH | aaaaaaaavababaaaaa |
1gpe_A_377 | 1gpe | A | 380 | 397 | WAEETVARGGFHNVTALK | HHHHHHHTTS-S-HHHHH | aaaaaaaavababaaaaa |
1h3f_A_371 | 1h3f | A | 371 | 388 | VARLFTLAGLTPSNAEAR | HHHHHHHTTSSSSHHHHH | aaaaaaaavababaaaaa |
1o17_A_282 | 1o17 | A | 292 | 309 | TAVALFALDRVGDFREGY | HHHHHHHTTSSSSHHHHH | aaaaaaaalababaaaaa |
1qv0_A_132 | 1qv0 | A | 135 | 152 | WKAYGKISGISPSQEDCE | HHHHHHHHSS---HHHHH | aaaaaaaavabaxaaaaa |
1uou_A_300 | 1uou | A | 310 | 327 | GGALLWLSGHAGTQAQGA | HHHHHHHHTS-SSHHHHH | aaaaaaaavababaaaaa |
1v8g_A_278 | 1v8g | A | 287 | 304 | AGAGFYAAGKTPSLKEGV | HHHHHHHHTSSSSHHHHH | aaaaaaaavababaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Clusters included in this Subclass |
CLUSTER: HH.5.80 |
CLUSTER: HH.5.81 |
CLUSTER: HH.6.36 |
CLUSTER: HH.7.31 |