Logo
Information on SUBCLASS 0.1.41
Subclass Accession number: 899
Subclass: 0.1.41 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005489 (>75 %)  
 Number of loops: 4

Average sequence ID (%) : 6.7 +/- 8.3
Average RMSD (Å) : 0.625 +/- 0.050

Consensus geometry
d (Å): 5 delta (°): 0-45 theta (°): 0-45 rho (°): 315-360
Consensus Sequence: hXpX
(φψ)-conformation: bpaa
Pattern: xx[AEFL][CN][DEHS]xxx[EFR]x
Conservation:0.107-0.705-0.7732.3110.852-1.044-0.502-0.6370.1480.243
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1h16_A_3981h16   A398407QYENDDLMRPEEEEHHHHHHbbbxaaaaaa
1l1s_A_681l1s   A6978FCACSNTLRAEEEEHHHHHHxbbxaaaaaa
1o97_C_311o97   C3342YDLNEWDDFSEEE-HHHHHHbbxpaaaaaa
1ofw_A_331ofw   A3342VVFNHLIHEKEEEEHHHHHHbxxxaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1l1s_A_681l1s   A     MSESELENOMETHIONINE T - 75
1l1s_A_681l1s   A     MSESELENOMETHIONINE L - 76
1l1s_A_681l1s   A     MSESELENOMETHIONINE R - 77
1l1s_A_681l1s   A     MSESELENOMETHIONINE A - 78
1o97_C_311o97   C     AMPADENOSINE MONOPHOSPHATE N - 36
1o97_C_311o97   C     FADFLAVIN-ADENINE DINUCLEOTIDE E - 37
1o97_C_311o97   C     AMPADENOSINE MONOPHOSPHATE W - 38
1o97_C_311o97   C     FADFLAVIN-ADENINE DINUCLEOTIDE W - 38
1o97_C_311o97   C     AMPADENOSINE MONOPHOSPHATE D - 39
1o97_C_311o97   C     AMPADENOSINE MONOPHOSPHATE S - 42
1ofw_A_331ofw   A     HECHEME C V - 33
1ofw_A_331ofw   A     HECHEME C V - 34
1ofw_A_331ofw   A     HECHEME C F - 35
1ofw_A_331ofw   A     HECHEME C N - 36
1ofw_A_331ofw   A     HECHEME C H - 37
1ofw_A_331ofw   A     HECHEME C I - 39
1ofw_A_331ofw   A     HECHEME C H - 40
1ofw_A_331ofw   A     HECHEME C E - 41
1ofw_A_331ofw   A     HECHEME C K - 43
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o97_C_311o97   C AMPAMP BINDING SITE FOR CHAIN CN - 36
1o97_C_311o97   C FADFAD BINDING SITE FOR CHAIN DW - 38
1o97_C_311o97   C AMPAMP BINDING SITE FOR CHAIN CD - 39
1ofw_A_331ofw   A AC1HEC BINDING SITE FOR CHAIN AF - 35
1ofw_A_331ofw   A AC1HEC BINDING SITE FOR CHAIN AH - 37
1ofw_A_331ofw   A AC1HEC BINDING SITE FOR CHAIN AH - 40
1ofw_A_331ofw   A AC3HEC BINDING SITE FOR CHAIN AK - 43

Clusters included in this Subclass
CLUSTER: EH.0.41