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Information on SUBCLASS 3.4.8
Subclass Accession number: 4700
Subclass: 3.4.8 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 16.2 +/- 19.3
Average RMSD (Å) : 0.667 +/- 0.266

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 45-90 rho (°): 45-90
Consensus Sequence: XXchXXX
(φψ)-conformation: aalbpaa
Pattern: [adpst][AEPS][AIY][efq][GQR]xx[DGS][FILVWY][aps]x[ael][der][ALVY]
Conservation:-1.1160.2890.271-0.0241.608-1.082-0.6562.2620.407-0.207-1.400-0.353-0.0310.033
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ew0_A_1641ew0   A164177AAAVRQFGYAEEEVHHHHHHH---HHHHaaaaaaavbxaaaa
1j54_A_601j54   A6073PEAFGVHGIADEFLHHHHHHH---HHHHaaaaaaavxxaaaa
1lsw_A_1701lsw   A170183TAAERLFGWSELEAHHHHHHHS--HHHHaaaaaaavbxaaaa
1n00_A_2811n00   A286299DEYQRRNSVPLTRAHHHHHHHSS-HHHHaaaaaaavbxaaaa
1olt_A_3851olt   A386399SPIEQQWDLLFADYHHHHHHTT--HHHHaaaaaaalbbaaaa
1oyj_A_1761oyj   A177190YSYERCGGFSVEEVHHHHHHHT--HHHHaaaaaaavbbaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ew0_A_1641ew0   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 170
1j54_A_601j54   A     TMPTHYMIDINE-5'-PHOSPHATE E - 61
1j54_A_601j54   A     TMPTHYMIDINE-5'-PHOSPHATE A - 62
1j54_A_601j54   A     TMPTHYMIDINE-5'-PHOSPHATE V - 65
1j54_A_601j54   A     TMPTHYMIDINE-5'-PHOSPHATE H - 66
1lsw_A_1701lsw   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 176
1oyj_A_1761oyj   A     GOLGLYCEROL F - 176
1oyj_A_1761oyj   A     GOLGLYCEROL Y - 177
1oyj_A_1761oyj   A     GOLGLYCEROL E - 180
1oyj_A_1761oyj   A     GOLGLYCEROL S - 186
1oyj_A_1761oyj   A     GOLGLYCEROL V - 187
1oyj_A_1761oyj   A     GOLGLYCEROL E - 188
1oyj_A_1761oyj   A     MGMAGNESIUM ION E - 189
1oyj_A_1761oyj   A     MGMAGNESIUM ION V - 190

Clusters included in this Subclass
CLUSTER: HH.4.117