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Information on SUBCLASS 4.11.1
Subclass Accession number: 1254
Subclass: 4.11.1 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0030151 (>50 %)  GO:0046914 (>50 %)  
SCOP : 53705 (>50 %)  53706 (>50 %)  53707 (>50 %)  
 Number of loops: 17

Average sequence ID (%) : 10.4 +/- 14.8
Average RMSD (Å) : 0.935 +/- 0.257

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: hXXXXppX
(φψ)-conformation: bbabpbaa
Pattern: [AFGILMTV][iltvy]xxxx[adenrst][dehnpqrt][adegkqrst]xx
Conservation:0.6082.166-0.589-1.304-0.940-1.2120.3220.532-0.1080.2280.298
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aco_*_6561aco   -659669IITKSFARIHEEEES-B-HHHHbbbabbxaaaa
1aq0_A_291aq0   A3040MRLYAPNQAALEEESS--HHHHbbbabwxaaaa
1ax4_A_1251ax4   A126136FISNFHFDTTAEEESS--HHHHbbbabxxaaaa
1dc1_A_2761dc1   A279289FIGAAIEHSMAEEESS--HHHHbbbabbbaaaa
1dmg_A_1531dmg   A155165IVLPWKEEGYMEEE---SHHHHbbbabxbaaaa
1duv_G_461duv   G4959LIFEKDSTRTREEESS--SHHHbxbabxbaaaa
1fq0_A_911fq0   A91101AISPGLTEPLLEEESS--HHHHbbbabbbaaaa
1g8k_A_2721g8k   A275285FVDPRETPSVAEE-SS--HHHHbbbabxbaaaa
1i5p_A_4221i5p   A428438GVPLVIRNEDLEEESS--HHHHebxabxxaaaa
1j6u_A_271j6u   A2939GSNIEETERTAEE-SS--HHHHbbbabxbaaaa
1knw_A_971knw   A99109FTADVIDQATLEEES---HHHHxbbabbxaaaa
1ml4_A_461ml4   A4959TLFFEPSTRTREEESS--SHHHxbbabxbaaaa
1nmo_A_1891nmo   A190200FITGEVSEQTIEEES---HHHHbbbabbbaaaa
1oth_A_811oth   A8494MIFEKRSTRTREEESS--SHHHbxbabxbaaaa
1uc8_A_21uc8   A414ILYDRIRPDEREEESS--HHHHxxbabxbaaaa
1vec_A_2611vec   A264274LYSATFPLSVQEEES---HHHHbbbabbxaaaa
1vhc_A_901vhc   A91101VVTPGLNPKIVEE-SS--HHHHbbbabbbaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ax4_A_1251ax4   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) F - 132
1ax4_A_1251ax4   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) T - 134
1ax4_A_1251ax4   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) T - 135
1dmg_A_1531dmg   A     CITCITRIC ACID P - 158
1dmg_A_1531dmg   A     CITCITRIC ACID W - 159
1dmg_A_1531dmg   A     CITCITRIC ACID K - 160
1dmg_A_1531dmg   A     CITCITRIC ACID E - 161
1duv_G_461duv   G     PSQNDELTA-(N'-SULPHODIAMINOPHOSPHINYL)-L-ORNITHINE F - 51
1duv_G_461duv   G     PSQNDELTA-(N'-SULPHODIAMINOPHOSPHINYL)-L-ORNITHINE K - 53
1duv_G_461duv   G     PSQNDELTA-(N'-SULPHODIAMINOPHOSPHINYL)-L-ORNITHINE D - 54
1duv_G_461duv   G     PSQNDELTA-(N'-SULPHODIAMINOPHOSPHINYL)-L-ORNITHINE S - 55
1duv_G_461duv   G     PSQNDELTA-(N'-SULPHODIAMINOPHOSPHINYL)-L-ORNITHINE T - 56
1duv_G_461duv   G     PSQNDELTA-(N'-SULPHODIAMINOPHOSPHINYL)-L-ORNITHINE R - 57
1duv_G_461duv   G     PSQNDELTA-(N'-SULPHODIAMINOPHOSPHINYL)-L-ORNITHINE T - 58
1duv_G_461duv   G     PSQNDELTA-(N'-SULPHODIAMINOPHOSPHINYL)-L-ORNITHINE R - 59
1fq0_A_911fq0   A     CITCITRIC ACID I - 92
1fq0_A_911fq0   A     CITCITRIC ACID S - 93
1fq0_A_911fq0   A     CITCITRIC ACID P - 94
1g8k_A_2721g8k   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE V - 276
1g8k_A_2721g8k   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE D - 277
1g8k_A_2721g8k   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE P - 278
1g8k_A_2721g8k   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE R - 279
1g8k_A_2721g8k   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE T - 281
1g8k_A_2721g8k   A     HGMERCURY (II) ION P - 282
1g8k_A_2721g8k   A     HGMERCURY (II) ION I - 286
1j6u_A_271j6u   A     MSESELENOMETHIONINE V - 27
1j6u_A_271j6u   A     MSESELENOMETHIONINE L - 41
1knw_A_971knw   A     PLPPYRIDOXAL-5'-PHOSPHATE T - 100
1ml4_A_461ml4   A     PALN-(PHOSPHONACETYL)-L-ASPARTIC ACID F - 51
1ml4_A_461ml4   A     PALN-(PHOSPHONACETYL)-L-ASPARTIC ACID E - 53
1ml4_A_461ml4   A     PALN-(PHOSPHONACETYL)-L-ASPARTIC ACID P - 54
1ml4_A_461ml4   A     PALN-(PHOSPHONACETYL)-L-ASPARTIC ACID S - 55
1ml4_A_461ml4   A     PALN-(PHOSPHONACETYL)-L-ASPARTIC ACID T - 56
1ml4_A_461ml4   A     PALN-(PHOSPHONACETYL)-L-ASPARTIC ACID R - 57
1ml4_A_461ml4   A     PALN-(PHOSPHONACETYL)-L-ASPARTIC ACID T - 58
1ml4_A_461ml4   A     PALN-(PHOSPHONACETYL)-L-ASPARTIC ACID R - 59
1nmo_A_1891nmo   A     FEFE (III) ION E - 197
1nmo_A_1891nmo   A     MSESELENOMETHIONINE Q - 198
1nmo_A_1891nmo   A     MSESELENOMETHIONINE H - 201
1nmo_A_1891nmo   A     MSESELENOMETHIONINE S - 202
1nmo_A_1891nmo   A     MSESELENOMETHIONINE E - 205
1oth_A_811oth   A     PAON-(PHOSPHONOACETYL)-L-ORNITHINE F - 86
1oth_A_811oth   A     PAON-(PHOSPHONOACETYL)-L-ORNITHINE K - 88
1oth_A_811oth   A     PAON-(PHOSPHONOACETYL)-L-ORNITHINE R - 89
1oth_A_811oth   A     PAON-(PHOSPHONOACETYL)-L-ORNITHINE S - 90
1oth_A_811oth   A     PAON-(PHOSPHONOACETYL)-L-ORNITHINE T - 91
1oth_A_811oth   A     PAON-(PHOSPHONOACETYL)-L-ORNITHINE R - 92
1oth_A_811oth   A     PAON-(PHOSPHONOACETYL)-L-ORNITHINE T - 93
1oth_A_811oth   A     PAON-(PHOSPHONOACETYL)-L-ORNITHINE R - 94
1vhc_A_901vhc   A     MSESELENOMETHIONINE G - 95
1vhc_A_901vhc   A     MSESELENOMETHIONINE L - 96
1vhc_A_901vhc   A     MSESELENOMETHIONINE N - 97
1vhc_A_901vhc   A     MSESELENOMETHIONINE P - 98
1vhc_A_901vhc   A     MSESELENOMETHIONINE K - 99
1vhc_A_901vhc   A     MSESELENOMETHIONINE V - 101
1vhc_A_901vhc   A     MSESELENOMETHIONINE K - 102
1vhc_A_901vhc   A     MSESELENOMETHIONINE Q - 105
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ax4_A_1251ax4   A LPAPYRIDOXAL 5-PHOSPHATE BINDING SITE.F - 132

Clusters included in this Subclass
CLUSTER: EH.3.136
CLUSTER: EH.3.187
CLUSTER: EH.4.102
CLUSTER: EH.4.50
CLUSTER: EH.5.76