ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.2.3

Subclass Accession number: 1076
Subclass: 2.2.3

PSSM

Type: EH beta-alpha
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 15

Average sequence ID (%) : 7.8 +/- 11.8
Average RMSD (Å) : 0.733 +/- 0.226

Consensus geometry

d (Å): 9

delta (°): 0-45

theta (°): 0-45

rho (°): 180-225

Consensus Sequence:	XXhpXX
(φψ)-conformation:	bbppaa

Pattern:	x	x	x	x	[dgknst]	x	x	[ADEGKNST]	[fiklmtv]
Conservation:	-1.000	-0.630	-0.165	-0.622	1.762	-1.403	-0.297	0.912	0.443

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a4i_A_5	1a4i	A	5	12	.EILNGKEI	.EE--HHHH	.xxxxaaaa
1bjt_*_783	1bjt	-	784	792	YTELNKLTR	EEE-TTHHH	bbbxxaaaa
1c7n_A_148	1c7n	A	148	156	YYTIDFQKL	EEE--HHHH	xxbxxaaaa
1d2f_A_147	1d2f	A	147	154	.WFCDMGKL	.EE--HHHH	.bbbxaaaa
1dpg_A_394	1dpg	A	400	408	GWTVSDEDK	EEE--HHHH	bbbpxaaaa
1fc4_A_189	1fc4	A	189	196	.VIANLKGV	.EE--HHHH	.bxxxaaaa
1gud_A_243	1gud	A	244	252	TVAQNPADI	EEE--HHHH	bxbxbaaaa
1kfw_A_385	1kfw	A	386	394	WSYDNIATT	EEE--HHHH	bxbbbaaaa
1ko7_A_31	1ko7	A	31	38	.ISRPGLEM	.EE--HHHH	.bbbxaaaa
1l9x_A_167	1l9x	A	172	180	KWSLSVKNF	EEE-BHHHH	abbxxaaaa
1n57_A_18	1n57	A	18	26	AFFPSEYSL	EEE--HHHH	bbxpxaaaa
1oyg_A_44	1oyg	A	44	51	.SHITRHDM	.EE--HHHH	.xbxxaaaa
1pbg_A_446	1pbg	A	448	456	ERYPKKSAH	EE-HHHHHH	xxbxxaaaa
1q74_A_179	1q74	A	182	190	WTVLGLSAL	EEE-BHHHH	bxbxxaaaa
1r6f_A_230	1r6f	A	231	239	KKIVSIKDF	EEE--HHHH	bbbbxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1fc4_A_189	1fc4	A	MSESELENOMETHIONINE	N - 192
1fc4_A_189	1fc4	A	MSESELENOMETHIONINE	G - 195
1fc4_A_189	1fc4	A	MSESELENOMETHIONINE	V - 196
1fc4_A_189	1fc4	A	MSESELENOMETHIONINE	L - 199
1ko7_A_31	1ko7	A	PO4PHOSPHATE ION	I - 31
1ko7_A_31	1ko7	A	PO4PHOSPHATE ION	R - 33
1n57_A_18	1n57	A	MSESELENOMETHIONINE	F - 19
1n57_A_18	1n57	A	MSESELENOMETHIONINE	F - 20
1n57_A_18	1n57	A	MSESELENOMETHIONINE	P - 21
1n57_A_18	1n57	A	MSESELENOMETHIONINE	S - 22
1n57_A_18	1n57	A	MSESELENOMETHIONINE	S - 25

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gud_A_243	1gud	A	ZN4ZN BINDING SITE FOR CHAIN A	E - 264

Clusters included in this Subclass

CLUSTER: EH.1.43

CLUSTER: EH.2.137

CLUSTER: EH.3.45