Information on SUBCLASS 2.1.3 |
Subclass Accession number: 109
Subclass: 2.1.3 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 17 Average sequence ID (%) : 9.7 +/- 15.2 Average RMSD (Å) : 0.712 +/- 0.173 Consensus geometry
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Consensus Sequence: | XXXXXh |
(φψ)-conformation: | aalpbb |
Pattern: | x | [adegqrs] | x | x | [adgkrt] | [afikltv] | x | x |
Conservation: | -0.180 | 1.315 | -0.292 | -0.911 | 1.569 | -0.278 | 0.109 | -1.331 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a9x_A_107 | 1a9x | A | 108 | 115 | LEEFGVTM | HHHHT-EE | aaaavxxx |
1cjx_A_27 | 1cjx | A | 30 | 37 | FEIMGFTK | HHHTT-EE | aaaavxbx |
1ei7_A_141 | 1ei7 | A | 145 | 152 | ESSSGLVW | HHHH--EE | aaaavxxx |
1h8p_A_100 | 1h8p | A | 100 | 107 | YDKDRAWK | HHHH--EE | aaaalxbb |
1hc7_A_430 | 1hc7 | A | 437 | 444 | QEETTATT | HHHH--EE | aaaavxbx |
1idp_A_51 | 1idp | A | 51 | 58 | RSFLDKLW | HHHHS-EE | aaaalbbb |
1j3b_A_403 | 1j3b | A | 414 | 421 | IRKHAPRV | HHHH--EE | aaaalxxb |
1j5u_A_26 | 1j5u | A | 38 | 45 | LEEEGIVL | HHHHT-EE | aaaalxbx |
1l6j_A_262 | 1l6j | A | 262 | 269 | YDTDDRFG | HHHH--EE | aaaaUbbb |
1l6j_A_320 | 1l6j | A | 320 | 327 | YDRDKLFG | HHHH--EE | aaaalbbb |
1l6j_A_379 | 1l6j | A | 379 | 386 | FDSDKKWG | HHHH--EE | aaaalxbb |
1n62_C_125 | 1n62 | C | 129 | 136 | MQCLGAAY | HHHHT-EE | aaaavxbx |
1o75_A_167 | 1o75 | A | 171 | 178 | KEKFHFVE | HHHH--EE | aaaalxbp |
1pfk_A_40 | 1pfk | A | 43 | 50 | GLYEDRMV | HHHTT-EE | aaaalbbb |
1qus_A_292 | 1qus | A | 295 | 302 | LAAAGLTP | HHHTT-EE | aaaagbbx |
1sqh_A_76 | 1sqh | A | 76 | 83 | FRTWGTYV | HHHH--EE | aaaavxbb |
1vh5_A_20 | 1vh5 | A | 21 | 28 | VGFLDIRF | HHHTT-EE | aaaavxbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1h8p_A_100 | 1h8p | A | POCPHOSPHOCHOLINE | Y - 100 |
1h8p_A_100 | 1h8p | A | POCPHOSPHOCHOLINE | W - 106 |
1h8p_A_100 | 1h8p | A | POCPHOSPHOCHOLINE | Y - 108 |
1hc7_A_430 | 1hc7 | A | ZNZINC ION | C - 432 |
1hc7_A_430 | 1hc7 | A | ZNZINC ION | E - 433 |
1hc7_A_430 | 1hc7 | A | ZNZINC ION | I - 436 |
1j3b_A_403 | 1j3b | A | PO4PHOSPHATE ION | E - 412 |
1j3b_A_403 | 1j3b | A | PO4PHOSPHATE ION | K - 413 |
1j3b_A_403 | 1j3b | A | PO4PHOSPHATE ION | K - 416 |
1j3b_A_403 | 1j3b | A | PO4PHOSPHATE ION | H - 417 |
1j5u_A_26 | 1j5u | A | MSESELENOMETHIONINE | E - 51 |
1j5u_A_26 | 1j5u | A | CACALCIUM ION | E - 51 |
1n62_C_125 | 1n62 | C | FADFLAVIN-ADENINE DINUCLEOTIDE | M - 125 |
1n62_C_125 | 1n62 | C | FADFLAVIN-ADENINE DINUCLEOTIDE | P - 126 |
1n62_C_125 | 1n62 | C | FADFLAVIN-ADENINE DINUCLEOTIDE | L - 138 |
1pfk_A_40 | 1pfk | A | ADPADENOSINE-5'-DIPHOSPHATE | Y - 41 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1h8p_A_100 | 1h8p | A | AC3POC BINDING SITE FOR RESIDUE A1110 | Y - 100 |
1h8p_A_100 | 1h8p | A | AC3POC BINDING SITE FOR RESIDUE A1110 | W - 106 |
1h8p_A_100 | 1h8p | A | AC3POC BINDING SITE FOR RESIDUE A1110 | Y - 108 |
1hc7_A_430 | 1hc7 | A | ZN1ZN BINDING SITE FOR CHAIN A | C - 432 |
Clusters included in this Subclass |
CLUSTER: HE.2.16 |