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Information on SUBCLASS 2.5.2
Subclass Accession number: 1112
Subclass: 2.5.2 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 56234 (>50 %)  56235 (>50 %)  56251 (>75 %)  
 Number of loops: 17

Average sequence ID (%) : 16.8 +/- 15.8
Average RMSD (Å) : 0.571 +/- 0.220

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XXGXXX
(φψ)-conformation: bbepaa
Pattern: xxxx[G][degpst]x[adegnpqst]x[AFGLTV]
Conservation:-0.278-0.492-0.329-0.3372.823-0.229-0.506-0.380-0.146-0.126
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1g0u_G_751g0u   G7685MVVNGPIPDAEEEES-HHHHbbbbepaaaa
1g3k_A_421g3k   A4453AGFAGGTADAEEEES-HHHHbbbbexaaaa
1id0_A_3711id0   A371379.SFVGEQNDF.EEES-HHHH.Obbexaaaa
1iug_A_521iug   A5463LILTGSGTLAEEEES-HHHHbxbxexaaaa
1j8f_A_3171j8f   A318327VAWLGECDQGEEEES-HHHHbbbxexaaaa
1jj7_A_7191jj7   A720729IREGGTHQQLEEEEE-HHHHxabbexaaaa
1m1n_B_851m1n   B8796PYVHGSQGCVEEEES-HHHHwbbxexaaaa
1mjf_A_1351mjf   A136145KLTIGDGFEFEEEES-HHHHbbbxexaaaa
1np7_A_811np7   A8291LVTTGLPEQVEEEES-HHHHxbbbexaaaa
1o04_A_2401o04   A241250VAFTGSTEIGEEEES-HHHHbbbbexaaaa
1od6_A_651od6   A6877ATFSGLLVDFEEE-S-HHHHbxbbexaaaa
1owl_A_731owl   A7483LLLQGDPQHLEEEES-HHHHxbbbexaaaa
1qfj_A_1771qfj   A177184..RTGTVLTA..EES-HHHH..xbebaaaa
1s5p_A_2521s5p   A252261EKYYGPASQVEEEES-HHHHbbbbepaaaa
1su4_A_4331su4   A434443YEKVGEATETEEEES-HHHHxbxbexaaaa
1ufk_A_1701ufk   A170179RFLEGSLEAAEEEES-HHHHxbbxebaaaa
1ukf_A_1741ukf   A176185VHASGGSAQLEE--S-HHHHbxapexaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1id0_A_3711id0   A     MGMAGNESIUM ION N - 385
1id0_A_3711id0   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER N - 385
1id0_A_3711id0   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER V - 386
1id0_A_3711id0   A     MGMAGNESIUM ION D - 388
1id0_A_3711id0   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER D - 388
1id0_A_3711id0   A     MGMAGNESIUM ION N - 389
1id0_A_3711id0   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER N - 389
1id0_A_3711id0   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER A - 390
1id0_A_3711id0   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER K - 392
1id0_A_3711id0   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER Y - 393
1iug_A_521iug   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) S - 59
1iug_A_521iug   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) G - 60
1iug_A_521iug   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) T - 61
1iug_A_521iug   A     PO4PHOSPHATE ION T - 61
1iug_A_521iug   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) L - 62
1iug_A_521iug   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) M - 64
1m1n_B_851m1n   B     CLFFE(8)-S(7) CLUSTER S - 92
1m1n_B_851m1n   B     CLFFE(8)-S(7) CLUSTER Q - 93
1m1n_B_851m1n   B     CLFFE(8)-S(7) CLUSTER G - 94
1m1n_B_851m1n   B     CLFFE(8)-S(7) CLUSTER C - 95
1m1n_B_851m1n   B     CLFFE(8)-S(7) CLUSTER V - 96
1m1n_B_851m1n   B     CACALCIUM ION Y - 98
1m1n_B_851m1n   B     HCA3-HYDROXY-3-CARBOXY-ADIPIC ACID Y - 98
1m1n_B_851m1n   B     CLFFE(8)-S(7) CLUSTER Y - 98
1m1n_B_851m1n   B     CLFFE(8)-S(7) CLUSTER F - 99
1m1n_B_851m1n   B     CACALCIUM ION S - 101
1m1n_B_851m1n   B     HCA3-HYDROXY-3-CARBOXY-ADIPIC ACID S - 101
1m1n_B_851m1n   B     CACALCIUM ION R - 105
1m1n_B_851m1n   B     HCA3-HYDROXY-3-CARBOXY-ADIPIC ACID R - 105
1m1n_B_851m1n   B     CACALCIUM ION F - 107
1o04_A_2401o04   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 243
1o04_A_2401o04   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 244
1o04_A_2401o04   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 245
1o04_A_2401o04   A     MGMAGNESIUM ION S - 246
1o04_A_2401o04   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 246
1o04_A_2401o04   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 247
1o04_A_2401o04   A     MGMAGNESIUM ION I - 249
1o04_A_2401o04   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 249
1o04_A_2401o04   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 250
1o04_A_2401o04   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 252
1o04_A_2401o04   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 253
1od6_A_651od6   A     PNS4'-PHOSPHOPANTETHEINE F - 70
1od6_A_651od6   A     PNS4'-PHOSPHOPANTETHEINE G - 72
1od6_A_651od6   A     PNS4'-PHOSPHOPANTETHEINE L - 73
1od6_A_651od6   A     PNS4'-PHOSPHOPANTETHEINE L - 74
1od6_A_651od6   A     PNS4'-PHOSPHOPANTETHEINE V - 75
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1od6_A_651od6   A AC1PNS BINDING SITE FOR CHAIN AG - 72
1od6_A_651od6   A AC1PNS BINDING SITE FOR CHAIN AL - 73
1od6_A_651od6   A AC1PNS BINDING SITE FOR CHAIN AL - 74

Clusters included in this Subclass
CLUSTER: EH.1.123
CLUSTER: EH.2.91
CLUSTER: EH.3.232
CLUSTER: EH.3.29