ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.4.4

Subclass Accession number: 1800
Subclass: 4.4.4

PSSM

Type: AR beta-beta link
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Conserved Annotation
EC : 1.5 (>75 %)  1.5.1 (>75 %)  1.5.1.3
GO : GO:0004146 (>75 %)  GO:0016645 (>75 %)  GO:0016646 (>75 %)
SCOP : 53596 (>75 %)  53597 (>75 %)  53598 (>75 %)

Number of loops: 5

Average sequence ID (%) : 17.2 +/- 16.0
Average RMSD (Å) : 1.340 +/- 0.207

Consensus geometry

d (Å): 5

delta (°): 45-90

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	XhXXGXph
(φψ)-conformation:	bbppgpbb

Pattern:	[ACT]	x	[agwy]	[AERS]	[afgl]	[itv]	[AILV]	x	[LV]	[AER]	[AEP]	[GN]	[ADT]	[EHQ]	[ALV]	[efq]	[HILV]	x
Conservation:	0.647	-1.199	-0.791	-0.198	-1.385	-0.464	0.371	-1.236	1.272	-0.030	-0.100	2.514	-0.172	1.423	0.451	-0.517	-0.160	-0.425

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1kxg_A_243	1kxg	A	245	262	CYSAGIAKLEEGDELQLA	EEEEEEEEE-TT-EEEEE	bbbbbbbxbbpgxbbbbb
1o91_A_697	1o91	A	699	716	ASGSAVLLLRPGDQVFLQ	EEEEEEEEE-TT-EEEEE	bbbbbxbxbbpgpbbbbb
1sox_A_411	1sox	A	411	428	ALWELTVPVEAGTELEIV	EEEEEEEEE-TT-EEEEE	bxbbbbbwbxpvbbbbxb
1vh4_A_166	1vh4	A	169	186	AHYRHHLDLAEGAEATVI	EEEEEEEEE-TT-EEEEE	bbbbbbbbbxpvxbbbbb
1vh4_A_197	1vh4	A	199	216	TGARFTINVAANAHLQHI	EEEEEEEEE-TT-EEEEE	xbbbbbbbbxpvxbbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1kxg_A_243	1kxg	A	MGMAGNESIUM ION	N - 243
1kxg_A_243	1kxg	A	MGMAGNESIUM ION	S - 244
1kxg_A_243	1kxg	A	DIO1,4-DIETHYLENE DIOXIDE	S - 244
1kxg_A_243	1kxg	A	DIO1,4-DIETHYLENE DIOXIDE	C - 245
1kxg_A_243	1kxg	A	DIO1,4-DIETHYLENE DIOXIDE	Y - 246
1kxg_A_243	1kxg	A	DIO1,4-DIETHYLENE DIOXIDE	S - 247
1kxg_A_243	1kxg	A	MGMAGNESIUM ION	K - 252
1kxg_A_243	1kxg	A	CITCITRIC ACID	K - 252
1kxg_A_243	1kxg	A	MGMAGNESIUM ION	L - 253
1kxg_A_243	1kxg	A	CITCITRIC ACID	L - 253
1kxg_A_243	1kxg	A	MGMAGNESIUM ION	E - 254
1kxg_A_243	1kxg	A	CITCITRIC ACID	E - 254
1kxg_A_243	1kxg	A	DIO1,4-DIETHYLENE DIOXIDE	G - 256
1kxg_A_243	1kxg	A	MGMAGNESIUM ION	D - 257
1kxg_A_243	1kxg	A	CITCITRIC ACID	D - 257
1kxg_A_243	1kxg	A	DIO1,4-DIETHYLENE DIOXIDE	D - 257
1kxg_A_243	1kxg	A	DIO1,4-DIETHYLENE DIOXIDE	E - 258
1kxg_A_243	1kxg	A	DIO1,4-DIETHYLENE DIOXIDE	Q - 260
1kxg_A_243	1kxg	A	DIO1,4-DIETHYLENE DIOXIDE	L - 261

Clusters included in this Subclass

CLUSTER: AR.3.81