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Information on SUBCLASS 1.2.10
Subclass Accession number: 2088
Subclass: 1.2.10 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 15.9 +/- 17.3
Average RMSD (Å) : 0.536 +/- 0.186

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 45-90 rho (°): 225-270
Consensus Sequence: XXchp
(φψ)-conformation: aabaa
Pattern: x[filty]x[adegkqrs][DKN][apy][dgqrs]x[fhilvy][ADNQRST][chnqrs]
Conservation:-0.803-0.187-0.936-0.6821.9811.854-0.009-0.636-0.2430.050-0.390
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ddz_A_3671ddz   A379389MLKQDPQFFSNHHHH-TTHHHHaaaabaaaaaa
1gvo_A_3241gvo   A325335DYIANPDLVARHHHH-TTHHHHaaaabaaaaaa
1gwe_A_2321gwe   A238248IAGENADFHRQHHHH-TTHHHHaaaabaaaaaa
1h7w_A_1091h7w   A116126IFSDNPLGLTCHHHH-TTHHHHaaaabaaaaaa
1htp_*_821htp   -8292GLTGKPGLINSHHHH-TTHHHHaaaabaaaaaa
1iat_A_251iat   A2838LFDANKDRFNHHHHH-TTHHHHaaaabaaaaaa
1m7s_A_2491m7s   A255265VQSKDYSHLTNHHHH-S-HHHHaaaabaaaaaa
1ogl_A_121ogl   A2636NIFMDPDWRQIHHHH-TTHHHHaaaabaaaaaa
1oyb_*_3481oyb   -349359FFISNPDLVDRHHHH-TTHHHHaaaabaaaaaa
1p80_A_3041p80   A310320LTGRDPDFHRRHHHH-TTHHHHaaaabaaaaaa
1st0_A_2981st0   A304314NLECDPRHYQQHHHH-TTHHHHaaaabaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gvo_A_3241gvo   A     FMNFLAVIN MONONUCLEOTIDE R - 324
1gvo_A_3241gvo   A     FMNFLAVIN MONONUCLEOTIDE D - 325
1gvo_A_3241gvo   A     FMNFLAVIN MONONUCLEOTIDE I - 327
1h7w_A_1091h7w   A     FS4IRON/SULFUR CLUSTER N - 120
1h7w_A_1091h7w   A     FS4IRON/SULFUR CLUSTER G - 123
1h7w_A_1091h7w   A     FS4IRON/SULFUR CLUSTER C - 126
1h7w_A_1091h7w   A     FS4IRON/SULFUR CLUSTER G - 127
1h7w_A_1091h7w   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 129
1iat_A_251iat   A     SULSULFATE ANION R - 27
1oyb_*_3481oyb   *     FMNFLAVIN MONONUCLEOTIDE R - 348
1oyb_*_3481oyb   *     FMNFLAVIN MONONUCLEOTIDE F - 349
1oyb_*_3481oyb   *     FMNFLAVIN MONONUCLEOTIDE F - 350
1oyb_*_3481oyb   *     FMNFLAVIN MONONUCLEOTIDE I - 351

Clusters included in this Subclass
CLUSTER: HH.2.60
CLUSTER: HH.3.82
CLUSTER: HH.4.41