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Information on SUBCLASS 3.5.3
Subclass Accession number: 217
Subclass: 3.5.3 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 4.1 (>75 %)  4.1.3 (>75 %)  4.1.3.1
SCOP : 51621 (>75 %)  88704 (>75 %)  
Number of loops: 7

Average sequence ID (%) : 8.3 +/- 10.2
Average RMSD (Å) : 1.000 +/- 0.208

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XXXXXhX
(φψ)-conformation: aalbpba
Pattern: [acikm][CFGILY][AENQ][ADEGKNS]xxxx[FTV]xx[aiklv]xx[fltvw]
Conservation:-0.571-0.3031.6660.285-0.4321.915-0.628-0.9021.904-0.437-0.6000.146-0.902-0.611-0.531
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e42_A_8611e42   A867881KLQNNNVYTIAKRNVHHHTTT-EEEEEEEEaaaaalbxxabbbxb
1hsk_A_1911hsk   A191205IIQKEHLVVLEAAFTHHHHTT-EEEEEEEEaaaaalxbxabbbbb
1jmk_C_811jmk   C92106KLEGQGRIVQRIIMVHHHHTT--EEEEEEEaaaaavxxbabbbbb
1pya_B_2071pya   B228242CGQDAHASFESSWIGHHHHHT--EEEEEEEaaaaalbbbabbbbb
1sjy_A_581sjy   A6680ACEETGLRVRPVKFLHHHHHS--EEEEEEEaaaaavbxbbwabxa
1ukf_A_2401ukf   A250264HYNSLNYDVACVNEFHHHHTT--EEEEEEEaaaaavbpxabbxbb
1vio_A_1851vio   A189203MFAALGNKVVGLHRWHHHHTT--EEEEEEEaaaaavbbxabbbxa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e42_A_8611e42   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED L - 868
1e42_A_8611e42   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED Q - 869
1e42_A_8611e42   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED N - 870
1e42_A_8611e42   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED N - 871
1e42_A_8611e42   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED N - 872
1e42_A_8611e42   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED Y - 874
1e42_A_8611e42   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE I - 876
1e42_A_8611e42   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE A - 877
1e42_A_8611e42   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE R - 879
1hsk_A_1911hsk   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 192
1hsk_A_1911hsk   A     FADFLAVIN-ADENINE DINUCLEOTIDE H - 196
1hsk_A_1911hsk   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 197
1hsk_A_1911hsk   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 198
1hsk_A_1911hsk   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 199
1hsk_A_1911hsk   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 200
1vio_A_1851vio   A     BU11,4-BUTANEDIOL Q - 185
1vio_A_1851vio   A     BU11,4-BUTANEDIOL V - 186
1vio_A_1851vio   A     BU11,4-BUTANEDIOL K - 187
1vio_A_1851vio   A     BU11,4-BUTANEDIOL V - 197
1vio_A_1851vio   A     BU11,4-BUTANEDIOL V - 198
1vio_A_1851vio   A     BU11,4-BUTANEDIOL G - 199
1vio_A_1851vio   A     BU11,4-BUTANEDIOL L - 200
1vio_A_1851vio   A     BU11,4-BUTANEDIOL H - 201
1vio_A_1851vio   A     BU11,4-BUTANEDIOL R - 202
1vio_A_1851vio   A     BU11,4-BUTANEDIOL W - 203
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e42_A_8611e42   A AC1MO5 BINDING SITE FOR CHAIN A SYMMETRY RELATED SUBUNITS CONTRIBUTE TO THE BINDING SITEQ - 869
1e42_A_8611e42   A AC1MO5 BINDING SITE FOR CHAIN A SYMMETRY RELATED SUBUNITS CONTRIBUTE TO THE BINDING SITEN - 870
1e42_A_8611e42   A AC1MO5 BINDING SITE FOR CHAIN A SYMMETRY RELATED SUBUNITS CONTRIBUTE TO THE BINDING SITEN - 872
1e42_A_8611e42   A AC1MO5 BINDING SITE FOR CHAIN A SYMMETRY RELATED SUBUNITS CONTRIBUTE TO THE BINDING SITEY - 874

Clusters included in this Subclass
CLUSTER: HE.3.44