Logo
Information on SUBCLASS 2.1.28
Subclass Accession number: 2187
Subclass: 2.1.28 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 1.3 (>75 %)  1.3.99 (>75 %)  4.2 (>75 %)  4.2.2 (>75 %)  4.2.2.1
GO : GO:0003995 (>75 %)  GO:0016627 (>75 %)  GO:0016829 (>75 %)  GO:0016835 (>75 %)  GO:0016837 (>75 %)  GO:0030340 (>75 %)  
SCOP : 48207 (>75 %)  48230 (>75 %)  48234 (>75 %)  56644 (>75 %)  56645 (>75 %)  56646 (>75 %)  
Number of loops: 4

Average sequence ID (%) : 11.1 +/- 14.6
Average RMSD (Å) : 0.625 +/- 0.263

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: pXhppp
(φψ)-conformation: aappaa
Pattern: xx[AIP][IKL]xxx[GL][ENST][ENY][ADQ][FQR][EKQ][EKR]x
Conservation:-0.560-0.8530.0620.312-1.441-0.780-1.367-0.5080.5410.4320.5150.0471.9901.816-0.207
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1buc_A_981buc   A98112ANPIWQFGTEAQKEKHHHHHHH--HHHHHHaaaaaaaxxaaaaaa
1n00_A_661n00   A6781LKALDKELSNDFERLHHHHHHHS-HHHHHHaaaaaaaxxaaaaaa
1oks_A_41oks   A923SIIKSSRLEEDRKRYHHHHHS-S-HHHHHHaaaaaxaxpaaaaaa
3mdd_A_923mdd   A105119QVPLIIGGNYQQQKKHHHHHHH--HHHHHHaaaaaaaxbaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1oks_A_41oks   A     MSESELENOMETHIONINE R - 4
1oks_A_41oks   A     MSESELENOMETHIONINE I - 7
1oks_A_41oks   A     MSESELENOMETHIONINE R - 8
1oks_A_41oks   A     MSESELENOMETHIONINE I - 11
1oks_A_41oks   A     MSESELENOMETHIONINE K - 12
1oks_A_41oks   A     NHE2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID L - 16
1oks_A_41oks   A     NHE2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID E - 17
1oks_A_41oks   A     MSESELENOMETHIONINE R - 20
1oks_A_41oks   A     NHE2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID R - 20
1oks_A_41oks   A     MSESELENOMETHIONINE K - 21
1oks_A_41oks   A     MSESELENOMETHIONINE R - 22
1oks_A_41oks   A     MSESELENOMETHIONINE Y - 23
1oks_A_41oks   A     NHE2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID Y - 23
3mdd_A_923mdd   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 100
3mdd_A_923mdd   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 103
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oks_A_41oks   A NHENHE BINDING SITE FOR CHAIN AR - 20
1oks_A_41oks   A NHENHE BINDING SITE FOR CHAIN AY - 23

Clusters included in this Subclass
CLUSTER: HH.3.195