Information on SUBCLASS 2.1.28 |
Subclass Accession number: 2187
Subclass: 2.1.28 Type: HH alpha-alpha DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation EC : 1.3 (>75 %) 1.3.99 (>75 %) 4.2 (>75 %) 4.2.2 (>75 %) 4.2.2.1 GO : GO:0003995 (>75 %) GO:0016627 (>75 %) GO:0016829 (>75 %) GO:0016835 (>75 %) GO:0016837 (>75 %) GO:0030340 (>75 %) SCOP : 48207 (>75 %) 48230 (>75 %) 48234 (>75 %) 56644 (>75 %) 56645 (>75 %) 56646 (>75 %) |
Number of loops: 4 Average sequence ID (%) : 11.1 +/- 14.6 Average RMSD (Å) : 0.625 +/- 0.263 Consensus geometry
|
Consensus Sequence: | pXhppp |
(φψ)-conformation: | aappaa |
Pattern: | x | x | [AIP] | [IKL] | x | x | x | [GL] | [ENST] | [ENY] | [ADQ] | [FQR] | [EKQ] | [EKR] | x |
Conservation: | -0.560 | -0.853 | 0.062 | 0.312 | -1.441 | -0.780 | -1.367 | -0.508 | 0.541 | 0.432 | 0.515 | 0.047 | 1.990 | 1.816 | -0.207 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1buc_A_98 | 1buc | A | 98 | 112 | ANPIWQFGTEAQKEK | HHHHHHH--HHHHHH | aaaaaaaxxaaaaaa |
1n00_A_66 | 1n00 | A | 67 | 81 | LKALDKELSNDFERL | HHHHHHHS-HHHHHH | aaaaaaaxxaaaaaa |
1oks_A_4 | 1oks | A | 9 | 23 | SIIKSSRLEEDRKRY | HHHHHS-S-HHHHHH | aaaaaxaxpaaaaaa |
3mdd_A_92 | 3mdd | A | 105 | 119 | QVPLIIGGNYQQQKK | HHHHHHH--HHHHHH | aaaaaaaxbaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1oks_A_4 | 1oks | A | MSESELENOMETHIONINE | R - 4 |
1oks_A_4 | 1oks | A | MSESELENOMETHIONINE | I - 7 |
1oks_A_4 | 1oks | A | MSESELENOMETHIONINE | R - 8 |
1oks_A_4 | 1oks | A | MSESELENOMETHIONINE | I - 11 |
1oks_A_4 | 1oks | A | MSESELENOMETHIONINE | K - 12 |
1oks_A_4 | 1oks | A | NHE2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID | L - 16 |
1oks_A_4 | 1oks | A | NHE2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID | E - 17 |
1oks_A_4 | 1oks | A | MSESELENOMETHIONINE | R - 20 |
1oks_A_4 | 1oks | A | NHE2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID | R - 20 |
1oks_A_4 | 1oks | A | MSESELENOMETHIONINE | K - 21 |
1oks_A_4 | 1oks | A | MSESELENOMETHIONINE | R - 22 |
1oks_A_4 | 1oks | A | MSESELENOMETHIONINE | Y - 23 |
1oks_A_4 | 1oks | A | NHE2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID | Y - 23 |
3mdd_A_92 | 3mdd | A | FADFLAVIN-ADENINE DINUCLEOTIDE | A - 100 |
3mdd_A_92 | 3mdd | A | FADFLAVIN-ADENINE DINUCLEOTIDE | L - 103 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1oks_A_4 | 1oks | A | NHENHE BINDING SITE FOR CHAIN A | R - 20 |
1oks_A_4 | 1oks | A | NHENHE BINDING SITE FOR CHAIN A | Y - 23 |
Clusters included in this Subclass |
CLUSTER: HH.3.195 |