ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 2.4.4

Subclass Accession number: 2238
Subclass: 2.4.4

Type: HH alpha-alpha
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 1.15 (>75 %)  1.15.1 (>75 %)  1.15.1.1 7 (>50 %)
GO : GO:0004784 (>75 %)  GO:0016721 (>75 %)
SCOP : 46556 (>75 %)  46609 (>75 %)  46610 (>75 %)

Number of loops: 4

Average sequence ID (%) : 13.3 +/- 14.2
Average RMSD (Å) : 0.750 +/- 0.208

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	phccXX
(φψ)-conformation:	aalbaa

Pattern:	x	[DRTY]	x	[IKLM]	x	[AGK]	[AL]	x	[ENQ]	[AKL]	[GK]	[DN]	x	[DGST]	x	x	[EP]	x	[FLV]	[DGSV]
Conservation:	-0.178	-0.817	-0.867	-0.072	-0.271	0.042	0.326	-1.215	1.024	-0.355	1.344	2.310	-0.917	-0.122	-0.519	-0.768	2.108	-0.768	0.483	-0.768

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1c3d_*_233	1c3d	-	241	260	SYALLALLQLKDFDFVPPVV	HHHHHHHHHTT-TTTHHHHH	aaaaaaaaaalxaaaaaaaa
1i19_A_372	1i19	A	374	393	ITDMIGAINAGNPGIAPLFG	HHHHHHHHHTT-GGGHHHHH	aaaaaaaaaagbaaaaaaaa
1oyz_A_239	1oyz	A	239	258	DDIIEAAGELGDKTLLPVLD	HHHHHHHHHH--GGGHHHHH	aaaaaaaaaavbaaaaaaaa
1vf6_A_13	1vf6	A	17	36	DRLKMKLQEKGDTSQNEKLS	HHHHHHHHHHT--TTHHHHH	aaaaaaaaaavbaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1oyz_A_239	1oyz	A	MSESELENOMETHIONINE	I - 242
1oyz_A_239	1oyz	A	MSESELENOMETHIONINE	L - 253
1oyz_A_239	1oyz	A	MSESELENOMETHIONINE	P - 255
1oyz_A_239	1oyz	A	MSESELENOMETHIONINE	V - 256
1oyz_A_239	1oyz	A	MSESELENOMETHIONINE	L - 257
1oyz_A_239	1oyz	A	MSESELENOMETHIONINE	D - 258

Clusters included in this Subclass

CLUSTER: HH.4.236

CLUSTER: HH.5.79

CLUSTER: HH.7.59