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Information on SUBCLASS 3.2.4
Subclass Accession number: 2278
Subclass: 3.2.4 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 10.5 +/- 12.6
Average RMSD (Å) : 0.689 +/- 0.203

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XXchphX
(φψ)-conformation: aalppaa
Pattern: [acgilt]xx[AGILV]x[adnqs]x[gn][GILMY][dhnprs][aipt]xx[FGILMV]
Conservation:-0.717-0.717-0.9540.579-0.1100.146-0.0332.5730.4840.458-0.776-0.547-1.3450.959
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c7q_A_2111c7q   A211224LLPIAVAGLNIDRMHHHHHHTT--HHHHaaaaaaavxxaaaa
1dnp_A_3411dnp   A349362SFLVKDLLIDWREGHHHHHTS---HHHHaaaaaaalxpaaaa
1ezm_*_2651ezm   -273286IRSAQNRNYSAADVHHHHHHTT--HHHHaaaaaaavbxaaaa
1gzs_B_1041gzs   B127140CNLLISKGINIAPFHHHHHHTT--SHHHaaaaaaavxxaaaa
1hhs_A_3341hhs   A341354CDELLNMGYAPWWVHHHHHHHT--HHHHaaaaaaavxpaaaa
1kp8_A_891kp8   A103116GLKAVAAGMNPMDLHHHHHHTT--HHHHaaaaaaagxxaaaa
1nnw_A_2271nnw   A230243EERIRAEGLPEEIIHHHHHHHT--HHHHaaaaaaavxpaaaa
1q3q_A_971q3q   A111124AEELLDQNIHPSIIHHHHHHTT--HHHHaaaaaaavxxaaaa
1vju_A_2581vju   A260273TKFGLQSGGRTESIHHHHHHTT--HHHHaaaaaaavxxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dnp_A_3411dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE N - 341
1dnp_A_3411dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE R - 342
1dnp_A_3411dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE R - 344
1dnp_A_3411dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE M - 345
1dnp_A_3411dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 348
1dnp_A_3411dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 366
1dnp_A_3411dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE M - 367
1kp8_A_891kp8   A     ATPADENOSINE-5'-TRIPHOSPHATE T - 89
1kp8_A_891kp8   A     KO4POTASSIUM ION, 4 WATERS COORDINATED T - 89
1kp8_A_891kp8   A     ATPADENOSINE-5'-TRIPHOSPHATE T - 90
1kp8_A_891kp8   A     KO4POTASSIUM ION, 4 WATERS COORDINATED T - 90
1kp8_A_891kp8   A     ATPADENOSINE-5'-TRIPHOSPHATE T - 91
1kp8_A_891kp8   A     ATPADENOSINE-5'-TRIPHOSPHATE A - 92
1q3q_A_971q3q   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER T - 97
1q3q_A_971q3q   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER T - 98
1q3q_A_971q3q   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER T - 99
1q3q_A_971q3q   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER A - 100

Clusters included in this Subclass
CLUSTER: HH.3.232
CLUSTER: HH.4.57
CLUSTER: HH.5.109