Information on SUBCLASS 3.3.5 |
Subclass Accession number: 2305
Subclass: 3.3.5 Type: HH alpha-alpha DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 16.3 +/- 18.1 Average RMSD (Å) : 0.920 +/- 0.192 Consensus geometry
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Consensus Sequence: | XXGXXhp |
(φψ)-conformation: | aagppaa |
Pattern: | [hkr] | x | [ert] | [tvy] | x | [AKQS] | x | [G] | [gitv] | [DNP] | [GILV] | [gks] | [AEST] | [ltv] | [ALMTV] | [adgq] | [AQS] | [AIMW] | x |
Conservation: | -0.026 | -0.914 | -0.441 | -0.176 | -0.934 | 0.121 | -0.479 | 3.652 | -0.905 | 0.812 | -0.055 | -0.134 | 0.137 | -0.226 | -0.040 | -0.761 | 0.365 | -0.315 | 0.317 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1all_B_115 | 1all | B | 116 | 134 | KETYNSLGVPIGATVQAIQ | HHHHHHHT--HHHHHHHHH | aaaaaaavxxaaaaaaaaa |
1bgx_T_628 | 1bgx | T | 628 | 646 | LIRVFQEGRDIHTETASWM | HHHHHHHT--HHHHHHHHH | aaaaaaavbxaaaaaaaaa |
1irq_A_34 | 1irq | A | 41 | 59 | KIETAKNGGNVKEVMDQAL | HHHHHHHT--HHHHHHHHH | aaaaaaagxbaaaaaaaaa |
1jbo_B_115 | 1jbo | B | 116 | 134 | RETYQALGTPGSSVAVAIQ | HHHHHHHT--HHHHHHHHH | aaaaaaavxxaaaaaaaaa |
1umd_A_98 | 1umd | A | 98 | 116 | HGLALALGIPLKELLGQML | HHHHHHHT--HHHHHHHHH | aaaaaaagxpaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1all_B_115 | 1all | B | CYCPHYCOCYANOBILIN | L - 115 |
1all_B_115 | 1all | B | CYCPHYCOCYANOBILIN | T - 118 |
1all_B_115 | 1all | B | CYCPHYCOCYANOBILIN | Y - 119 |
1all_B_115 | 1all | B | CYCPHYCOCYANOBILIN | L - 122 |
1all_B_115 | 1all | B | CYCPHYCOCYANOBILIN | V - 124 |
1all_B_115 | 1all | B | CYCPHYCOCYANOBILIN | P - 125 |
1all_B_115 | 1all | B | CYCPHYCOCYANOBILIN | I - 126 |
1all_B_115 | 1all | B | CYCPHYCOCYANOBILIN | A - 128 |
1all_B_115 | 1all | B | CYCPHYCOCYANOBILIN | T - 129 |
1all_B_115 | 1all | B | CYCPHYCOCYANOBILIN | A - 132 |
1jbo_B_115 | 1jbo | B | MENN-METHYL ASPARAGINE | L - 122 |
1jbo_B_115 | 1jbo | B | MENN-METHYL ASPARAGINE | G - 123 |
1jbo_B_115 | 1jbo | B | MENN-METHYL ASPARAGINE | T - 124 |
1jbo_B_115 | 1jbo | B | CYCPHYCOCYANOBILIN | T - 124 |
1jbo_B_115 | 1jbo | B | MENN-METHYL ASPARAGINE | P - 125 |
1jbo_B_115 | 1jbo | B | CYCPHYCOCYANOBILIN | S - 128 |
1jbo_B_115 | 1jbo | B | CYCPHYCOCYANOBILIN | V - 129 |
1jbo_B_115 | 1jbo | B | CYCPHYCOCYANOBILIN | A - 144 |
Clusters included in this Subclass |
CLUSTER: HH.2.108 |