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Information on SUBCLASS 3.4.9
Subclass Accession number: 2317
Subclass: 3.4.9 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 13.6 +/- 13.1
Average RMSD (Å) : 0.700 +/- 0.300

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXXXDXX
(φψ)-conformation: aapapaa
Pattern: x[ACV][KV]x[KV][ALM][KL][AKQ][CNT]x[D][EKP]xxx[EKT]x[L]x[QRY]xx
Conservation:-0.9740.2030.223-0.3860.2450.0340.223-0.050-0.050-0.6383.4810.203-0.890-0.806-0.2180.034-0.6381.968-0.8060.034-0.638-0.554
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1hu3_A_9121hu3   A912933DCVVKLLKNHDEESLECLCRLLHHHHHHHHS-SHHHHHHHHHHHaaaaaaaaxaxaaaaaaaaaaa
1qkr_A_9441qkr   A964985LAKEVAKQCTDKRIRTNLLQVCHHHHHHHH---HHHHHHHHHHHaaaaaaaaxaxaaaaaaaaaaa
1tgo_A_4481tgo   A462483KVKKKMKATIDPIEKKLLDYRQHHHHHHHH---HHHHHHHHHHHaaaaaaaaxaxaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1hu3_A_9121hu3   A     MSESELENOMETHIONINE D - 912
1hu3_A_9121hu3   A     MSESELENOMETHIONINE C - 913
1hu3_A_9121hu3   A     MSESELENOMETHIONINE V - 914
1hu3_A_9121hu3   A     MSESELENOMETHIONINE V - 915
1hu3_A_9121hu3   A     MSESELENOMETHIONINE L - 918
1hu3_A_9121hu3   A     MSESELENOMETHIONINE L - 926
1hu3_A_9121hu3   A     MSESELENOMETHIONINE E - 927
1hu3_A_9121hu3   A     MSESELENOMETHIONINE L - 929
1hu3_A_9121hu3   A     MSESELENOMETHIONINE C - 930
1hu3_A_9121hu3   A     MSESELENOMETHIONINE R - 931
1hu3_A_9121hu3   A     MSESELENOMETHIONINE L - 932
1hu3_A_9121hu3   A     MSESELENOMETHIONINE L - 933
1hu3_A_9121hu3   A     MSESELENOMETHIONINE I - 936
1hu3_A_9121hu3   A     MSESELENOMETHIONINE G - 937
1hu3_A_9121hu3   A     MSESELENOMETHIONINE L - 940
1qkr_A_9441qkr   A     MSESELENOMETHIONINE L - 947
1qkr_A_9441qkr   A     MSESELENOMETHIONINE C - 950
1qkr_A_9441qkr   A     MSESELENOMETHIONINE A - 951
1qkr_A_9441qkr   A     MSESELENOMETHIONINE D - 953
1qkr_A_9441qkr   A     MSESELENOMETHIONINE I - 954
1qkr_A_9441qkr   A     MSESELENOMETHIONINE A - 957
1qkr_A_9441qkr   A     MSESELENOMETHIONINE S - 958
1qkr_A_9441qkr   A     MSESELENOMETHIONINE V - 961

Clusters included in this Subclass
CLUSTER: HH.3.266