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Information on SUBCLASS 4.5.1
Subclass Accession number: 2377
Subclass: 4.5.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 11.3 +/- 12.8
Average RMSD (Å) : 0.600 +/- 0.166

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: XXcphXXX
(φψ)-conformation: aalappaa
Pattern: x[knqr][fgiklv]xx[ADGNR][ekqt][ailv][aqrst][dkpr][ADEGRS]x[aflvw]x
Conservation:-0.9400.764-1.831-0.668-0.8761.0641.1541.3020.2180.9700.711-0.425-0.508-0.935
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b5l_*_411b5l   -4154EMVEGDQLQKDQAFHHHHHT-S-HHHHHaaaaavabxaaaaa
1dvk_A_1331dvk   A148161LQLRRNQLAPDLLIHHHHHT-S-HHHHHaaaaalaxxaaaaa
1e3m_A_3481e3m   A353366ARLALRTARPRDLAHHHHHT---HHHHHaaaaavapxaaaaa
1hr6_B_3491hr6   B361374KRIKSGKISDAEVNHHHHTT---HHHHHaaaaavabxaaaaa
1lc0_A_2491lc0   A258271VQKLLDQVSAEDLAHHHHTT-S-HHHHHaaaaalabxaaaaa
1n45_A_321n45   A3548RNFQKGQVTRDGFKHHHHTT---HHHHHaaaaavaxbaaaaa
1ofw_A_1391ofw   A143156QKGINGTLLPGDNEHHHHHT-S-HHHHHaaaaavaxxaaaaa
1rcw_A_251rcw   A2841VKWSKGELTKEQLQHHHHTT---HHHHHaaaaavabxaaaaa
1tca_*_1421tca   -143156PLDALAVSAPSVWQHHHHTT-B-HHHHHaaaaavabxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e3m_A_3481e3m   A     MSESELENOMETHIONINE L - 348
1e3m_A_3481e3m   A     MSESELENOMETHIONINE E - 349
1e3m_A_3481e3m   A     MSESELENOMETHIONINE R - 350
1e3m_A_3481e3m   A     MSESELENOMETHIONINE I - 351
1e3m_A_3481e3m   A     MSESELENOMETHIONINE L - 352
1e3m_A_3481e3m   A     MSESELENOMETHIONINE L - 355
1e3m_A_3481e3m   A     MSESELENOMETHIONINE A - 360
1e3m_A_3481e3m   A     MSESELENOMETHIONINE R - 363
1e3m_A_3481e3m   A     MSESELENOMETHIONINE D - 364
1e3m_A_3481e3m   A     MSESELENOMETHIONINE L - 365
1e3m_A_3481e3m   A     MSESELENOMETHIONINE A - 366
1lc0_A_2491lc0   A     PO4PHOSPHATE ION L - 281
1lc0_A_2491lc0   A     PO4PHOSPHATE ION S - 285
1lc0_A_2491lc0   A     PO4PHOSPHATE ION Q - 288
1lc0_A_2491lc0   A     PO4PHOSPHATE ION K - 289
1n45_A_321n45   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 34
1n45_A_321n45   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 35
1n45_A_321n45   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 38
1ofw_A_1391ofw   A     GOLGLYCEROL M - 142
1rcw_A_251rcw   A     MSESELENOMETHIONINE T - 25
1rcw_A_251rcw   A     MSESELENOMETHIONINE F - 26
1rcw_A_251rcw   A     MSESELENOMETHIONINE Y - 27
1rcw_A_251rcw   A     MSESELENOMETHIONINE V - 28
1rcw_A_251rcw   A     MSESELENOMETHIONINE Y - 43
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ofw_A_1391ofw   A CC2GOL BINDING SITE FOR CHAIN AM - 142

Clusters included in this Subclass
CLUSTER: HH.3.255
CLUSTER: HH.4.221
CLUSTER: HH.4.84
CLUSTER: HH.6.66