ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 0.1.14

Subclass Accession number: 2564
Subclass: 0.1.14

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 11

Average sequence ID (%) : 11.4 +/- 16.0
Average RMSD (Å) : 0.464 +/- 0.196

Consensus geometry

d (Å): 5

delta (°): 0-45

theta (°): 0-45

rho (°): 0-45

Consensus Sequence:	XpXX
(φψ)-conformation:	bbaa

Pattern:	x	[dgsv]	[acgikltv]	[adgnrs]	x	x	x
Conservation:	1.425	1.293	-0.686	0.041	-0.271	-1.154	-0.648

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1aox_A_275	1aox	A	281	287	AVLGYLN	EE-HHHH	xxaaaaa
1bf6_A_17	1bf6	A	17	23	IDLSGFK	EE-HHHH	bbaaaaa
1chm_A_144	1chm	A	146	152	VDVAAAC	EE-HHHH	bxaaaaa
1ffv_B_59	1ffv	B	64	70	IHKDAAL	EE-HHHH	bxaaaaa
1ih7_A_624	1ih7	A	627	633	VSADKII	EE-HHHH	bxaaaaa
1k7h_A_305	1k7h	A	310	316	EGGRIDH	EE-HHHH	bxaaaaa
1k92_A_66	1k92	A	70	76	IDCRKQL	EE-HHHH	xxaaaaa
1m7y_A_73	1m7y	A	73	79	ESIFAEL	EE-HHHH	bxaaaaa
1n62_B_62	1n62	B	67	73	IDTSKAK	EE-HHHH	bxaaaaa
1qla_B_104	1qla	B	105	111	VDTGNWF	EE-HHHH	bxaaaaa
1vk3_A_63	1vk3	A	70	76	ESHNHPS	EE-HHHH	bxaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1aox_A_275	1aox	A	MGMAGNESIUM ION	Y - 285
1bf6_A_17	1bf6	A	ZNZINC ION	I - 17
1k7h_A_305	1k7h	A	ZNZINC ION	E - 310
1k7h_A_305	1k7h	A	ZNZINC ION	G - 312
1k7h_A_305	1k7h	A	ZNZINC ION	D - 315
1k7h_A_305	1k7h	A	ZNZINC ION	H - 316
1k7h_A_305	1k7h	A	ZNZINC ION	H - 319
1qla_B_104	1qla	B	FS4IRON/SULFUR CLUSTER	F - 111
1vk3_A_63	1vk3	A	MSESELENOMETHIONINE	A - 66
1vk3_A_63	1vk3	A	MSESELENOMETHIONINE	F - 67
1vk3_A_63	1vk3	A	MSESELENOMETHIONINE	K - 68

Clusters included in this Subclass

CLUSTER: EH.0.35

CLUSTER: EH.2.97