ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 1.1.30

Subclass Accession number: 2659
Subclass: 1.1.30

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 10

Average sequence ID (%) : 21.7 +/- 19.4
Average RMSD (Å) : 0.540 +/- 0.171

Consensus geometry

d (Å): 7

delta (°): 45-90

theta (°): 90-135

rho (°): 0-45

Consensus Sequence:	XGphX
(φψ)-conformation:	bepaa

Pattern:	[acfgilm]	[cgstv]	[G]	[dhknpst]	[glmp]	[DEGST]	x	[aflv]
Conservation:	-0.562	-0.290	2.434	-0.391	-0.542	-0.016	-0.440	-0.193

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1apy_B_229	1apy	B	233	240	ATGNGDIL	EEE-HHHH	bbexaaaa
1c44_A_100	1c44	A	101	108	ITGNMGLA	EEE-HHHH	bbexaaaa
1fnc_*_267	1fnc	-	271	278	MCGLKGME	EEE-HHHH	bbexaaaa
1jmv_A_83	1jmv	A	86	93	GSGDLGQV	EEE-HHHH	bbexaaaa
1ju2_A_271	1ju2	A	271	277	.VGPESYL	.EE-HHHH	.bepaaaa
1k2x_B_225	1k2x	B	229	236	CTGTGEVF	EEE-HHHH	bbexaaaa
1m32_A_56	1m32	A	61	68	LQGSGSYA	EES-HHHH	bxexaaaa
1o7q_A_279	1o7q	A	284	291	FGGTPTQV	EEE-HHHH	bbexaaaa
1oxx_K_218	1oxx	K	221	228	QVGKPEDL	EEE-HHHH	bbexaaaa
2gac_B_198	2gac	B	202	209	ATGHGEEV	EEE-HHHH	bbexaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1fnc_*_267	1fnc	*	A2PADENOSINE-2'-5'-DIPHOSPHATE	L - 274
1fnc_*_267	1fnc	*	A2PADENOSINE-2'-5'-DIPHOSPHATE	K - 275
1fnc_*_267	1fnc	*	A2PADENOSINE-2'-5'-DIPHOSPHATE	G - 276
1fnc_*_267	1fnc	*	A2PADENOSINE-2'-5'-DIPHOSPHATE	M - 277
1fnc_*_267	1fnc	*	A2PADENOSINE-2'-5'-DIPHOSPHATE	E - 278
1fnc_*_267	1fnc	*	A2PADENOSINE-2'-5'-DIPHOSPHATE	G - 280
1m32_A_56	1m32	A	MSESELENOMETHIONINE	S - 58
1m32_A_56	1m32	A	MSESELENOMETHIONINE	V - 59
1m32_A_56	1m32	A	MSESELENOMETHIONINE	L - 60
1m32_A_56	1m32	A	MSESELENOMETHIONINE	L - 61
1m32_A_56	1m32	A	PLPPYRIDOXAL-5'-PHOSPHATE	G - 63
1m32_A_56	1m32	A	MSESELENOMETHIONINE	S - 64
1m32_A_56	1m32	A	PLPPYRIDOXAL-5'-PHOSPHATE	S - 64
1m32_A_56	1m32	A	MSESELENOMETHIONINE	G - 65
1m32_A_56	1m32	A	PLPPYRIDOXAL-5'-PHOSPHATE	G - 65
1m32_A_56	1m32	A	MSESELENOMETHIONINE	S - 66
1m32_A_56	1m32	A	PLPPYRIDOXAL-5'-PHOSPHATE	S - 66
1m32_A_56	1m32	A	MSESELENOMETHIONINE	Y - 67
1m32_A_56	1m32	A	PLPPYRIDOXAL-5'-PHOSPHATE	Y - 67
1m32_A_56	1m32	A	MSESELENOMETHIONINE	A - 68
1m32_A_56	1m32	A	MSESELENOMETHIONINE	V - 69
1m32_A_56	1m32	A	PLPPYRIDOXAL-5'-PHOSPHATE	V - 69
1m32_A_56	1m32	A	MSESELENOMETHIONINE	E - 70
1m32_A_56	1m32	A	MSESELENOMETHIONINE	A - 71
1m32_A_56	1m32	A	MSESELENOMETHIONINE	L - 73
1m32_A_56	1m32	A	MSESELENOMETHIONINE	G - 74
1o7q_A_279	1o7q	A	MNMANGANESE (II) ION	H - 280
1o7q_A_279	1o7q	A	GALD-GALACTOSE	H - 280
1o7q_A_279	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	H - 280
1o7q_A_279	1o7q	A	GALD-GALACTOSE	A - 281
1o7q_A_279	1o7q	A	MNMANGANESE (II) ION	A - 282
1o7q_A_279	1o7q	A	GALD-GALACTOSE	A - 282
1o7q_A_279	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	A - 282
1o7q_A_279	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	L - 303
1o7q_A_279	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	D - 305
1o7q_A_279	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	K - 306
1o7q_A_279	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	K - 307
1oxx_K_218	1oxx	K	IODIODIDE ION	K - 218
1oxx_K_218	1oxx	K	IODIODIDE ION	L - 219
1oxx_K_218	1oxx	K	IODIODIDE ION	V - 220
1oxx_K_218	1oxx	K	IODIODIDE ION	Q - 221
1oxx_K_218	1oxx	K	IODIODIDE ION	V - 222
1oxx_K_218	1oxx	K	IODIODIDE ION	G - 223
1oxx_K_218	1oxx	K	IODIODIDE ION	K - 224
1oxx_K_218	1oxx	K	IODIODIDE ION	P - 225
1oxx_K_218	1oxx	K	IODIODIDE ION	E - 226
1oxx_K_218	1oxx	K	IODIODIDE ION	D - 227

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1o7q_A_279	1o7q	A	AC4GAL BINDING SITE FOR CHAIN A	H - 280
1o7q_A_279	1o7q	A	AC7UDP BINDING SITE FOR CHAIN A	K - 306
1o7q_A_279	1o7q	A	AC7UDP BINDING SITE FOR CHAIN A	K - 307

Clusters included in this Subclass

CLUSTER: EH.0.34

CLUSTER: EH.1.71