ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 2.7.1

Subclass Accession number: 2853
Subclass: 2.7.1

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 15

Average sequence ID (%) : 35.0 +/- 26.9
Average RMSD (Å) : 0.353 +/- 0.226

Consensus geometry

d (Å): 11

delta (°): 0-45

theta (°): 45-90

rho (°): 90-135

Consensus Sequence:	XhhhSX
(φψ)-conformation:	bpaeaa

Pattern:	[fmr]	[aeps]	[filmy]	[acglmt]	[DS]	[tvw]	x	[ak]	x	[fhilmvy]	x
Conservation:	0.505	-0.122	0.329	-0.922	2.023	0.096	-0.691	1.269	-1.410	-0.439	-0.637

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1alq_*_66	1alq	-	66	76	FAYASTSKAIN	EE-GGGHHHHH	bxaeaaaaaaa
1bsg_*_66	1bsg	-	66	76	FPMCSVFKTLS	EE-GGGGHHHH	bxaeaaaaaaa
1bue_A_66	1bue	A	66	76	FPLCSSFKGFL	EE-GGGGHHHH	bxaeaaaaaaa
1ci9_A_71	1ci9	A	71	81	FRLASVTKPIV	EE-GGGHHHHH	bxaeaaaaaaa
1e25_A_66	1e25	A	66	76	FPMQSVFKLHL	EE-GGGHHHHH	bxaeaaaaaaa
1ei5_A_58	1ei5	A	58	68	MPICSVSKQFT	EE-GGGHHHHH	bxaeaaaaaaa
1g6a_A_66	1g6a	A	66	76	FPLTSTFKTIA	EE-GGGGHHHH	bxaeaaaaaaa
1hzo_A_66	1hzo	A	66	76	FAMASTSKVMA	EE-GGGGHHHH	bxaeaaaaaaa
1i2s_A_66	1i2s	A	66	76	FAFASTIKALT	EE-GGGHHHHH	bxaeaaaaaaa
1j9m_A_31	1j9m	A	31	41	RSTGSTTHIMT	EE-GGGGHHHH	bxaeaaaaaaa
1mfo_A_66	1mfo	A	66	76	FAMCSTFKGYV	EE-GGGGHHHH	bxaeaaaaaaa
1n9b_A_66	1n9b	A	66	76	FPMMSTFKVVL	EE-GGGHHHHH	bpaeaaaaaaa
1o7e_A_66	1o7e	A	66	76	FPMCSTFKSML	EE-GGGGHHHH	bxaeaaaaaaa
1rgy_A_60	1rgy	A	60	70	FELGSVSKTFN	EE-GGGHHHHH	bxaeaaaaaaa
1set_A_342	1set	A	350	360	SALLDWQARRA	EE-TTHHHHHH	bbaeaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ci9_A_71	1ci9	A	DFPDIISOPROPYLPHOSPHONO GROUP	L - 73
1ci9_A_71	1ci9	A	DFPDIISOPROPYLPHOSPHONO GROUP	A - 74
1ci9_A_71	1ci9	A	DFPDIISOPROPYLPHOSPHONO GROUP	S - 75
1ci9_A_71	1ci9	A	DFPDIISOPROPYLPHOSPHONO GROUP	V - 76
1ci9_A_71	1ci9	A	DFPDIISOPROPYLPHOSPHONO GROUP	K - 78
1hzo_A_66	1hzo	A	MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID	A - 69
1hzo_A_66	1hzo	A	MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID	S - 70
1i2s_A_66	1i2s	A	CITCITRIC ACID	S - 70
1i2s_A_66	1i2s	A	CITCITRIC ACID	K - 73
1n9b_A_66	1n9b	A	EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID	S - 70
1n9b_A_66	1n9b	A	EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID	K - 73
1n9b_A_66	1n9b	A	MPD2-METHYL-2,4-PENTANEDIOL	A - 82
1n9b_A_66	1n9b	A	MPD2-METHYL-2,4-PENTANEDIOL	R - 83
1rgy_A_60	1rgy	A	PTX{[(2E)-2-(2-AMINO-1,3-THIAZOL-4-YL)-2-(METHOXYIMINO) ETHANOYL]AMINO}METHYLPHOSPHONIC ACID	L - 62
1rgy_A_60	1rgy	A	PTX{[(2E)-2-(2-AMINO-1,3-THIAZOL-4-YL)-2-(METHOXYIMINO) ETHANOYL]AMINO}METHYLPHOSPHONIC ACID	G - 63
1rgy_A_60	1rgy	A	PTX{[(2E)-2-(2-AMINO-1,3-THIAZOL-4-YL)-2-(METHOXYIMINO) ETHANOYL]AMINO}METHYLPHOSPHONIC ACID	S - 64
1rgy_A_60	1rgy	A	PTX{[(2E)-2-(2-AMINO-1,3-THIAZOL-4-YL)-2-(METHOXYIMINO) ETHANOYL]AMINO}METHYLPHOSPHONIC ACID	V - 65
1rgy_A_60	1rgy	A	PTX{[(2E)-2-(2-AMINO-1,3-THIAZOL-4-YL)-2-(METHOXYIMINO) ETHANOYL]AMINO}METHYLPHOSPHONIC ACID	K - 67
1set_A_342	1set	A	SSA5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE	E - 345
1set_A_342	1set	A	SSA5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE	T - 346
1set_A_342	1set	A	SSA5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE	H - 347
1set_A_342	1set	A	SSA5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE	S - 348
1set_A_342	1set	A	SSA5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE	C - 349
1set_A_342	1set	A	SSA5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE	S - 350

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1mfo_A_66	1mfo	A	ACTACTIVE SERINE 70	S - 70

Clusters included in this Subclass