ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.11.2

Subclass Accession number: 3236
Subclass: 5.11.2

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 7

Average sequence ID (%) : 28.9 +/- 21.9
Average RMSD (Å) : 0.457 +/- 0.151

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 135-180

rho (°): 225-270

Consensus Sequence:	DhhXhpGhh
(φψ)-conformation:	bplaeagaa

Pattern:	[HKNRST]	[FV]	[AILY]	[DE]	[AILPV]	[AFG]	[ACGT]	[AGS]	[hnrs]	[G]	[AGIPV]	[AFILM]	[aglt]	[acilv]	[AGS]	[afilv]	[aer]
Conservation:	-0.395	0.576	-0.240	1.885	-0.499	0.189	-0.320	0.700	-0.614	2.700	-0.885	-0.289	-0.998	-0.719	0.256	-0.687	-0.661

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1g38_A_42	1g38	A	42	58	RVLEPACAHGPFLRAFR	EEEEET-TT-HHHHHHH	xbbbxlaeavaaaaaaa
1im8_A_58	1im8	A	58	74	NVYDLGCSRGAATLSAR	EEEEES-TT-HHHHHHH	bbbbxvaeavaaaaaaa
1ne2_A_51	1ne2	A	51	67	SVIDAGTGNGILACGSY	EEEEET-TT-HHHHHHH	xbbbxvaeavaaaaaaa
1nv8_A_124	1nv8	A	124	140	TVADIGTGSGAIGVSVA	EEEEES-TTSHHHHHHH	bbbbxvaeagaaaaaaa
1qzz_A_185	1qzz	A	185	201	HVLDVGGGNGGMLAAIA	EEEEET-TTSHHHHHHH	bbxbxvaeavaaaaaaa
1ufk_A_123	1ufk	A	123	139	KVLDLGTGSGVLAIAAE	EEEEET-TT-HHHHHHH	xbbbxvaeavaaaaaaa
6mht_A_13	6mht	A	13	29	RFIDLFAGLGGFRLALE	EEEEET-TT-HHHHHHH	bbbbxlaeavaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1g38_A_42	1g38	A	NEA5'-DEOXY-5'-[2-(AMINO)ETHYLTHIO]ADENOSINE	E - 45
1g38_A_42	1g38	A	NEA5'-DEOXY-5'-[2-(AMINO)ETHYLTHIO]ADENOSINE	P - 46
1g38_A_42	1g38	A	NEA5'-DEOXY-5'-[2-(AMINO)ETHYLTHIO]ADENOSINE	A - 47
1g38_A_42	1g38	A	NEA5'-DEOXY-5'-[2-(AMINO)ETHYLTHIO]ADENOSINE	C - 48
1g38_A_42	1g38	A	NEA5'-DEOXY-5'-[2-(AMINO)ETHYLTHIO]ADENOSINE	A - 49
1g38_A_42	1g38	A	NEA5'-DEOXY-5'-[2-(AMINO)ETHYLTHIO]ADENOSINE	P - 52
1g38_A_42	1g38	A	NEA5'-DEOXY-5'-[2-(AMINO)ETHYLTHIO]ADENOSINE	F - 53
1im8_A_58	1im8	A	MSESELENOMETHIONINE	N - 58
1im8_A_58	1im8	A	MSESELENOMETHIONINE	V - 59
1im8_A_58	1im8	A	MSESELENOMETHIONINE	Y - 60
1im8_A_58	1im8	A	MSESELENOMETHIONINE	D - 61
1im8_A_58	1im8	A	SAIS-ADENOSYL-L-HOMOSELENOCYSTEINE	D - 61
1im8_A_58	1im8	A	SAIS-ADENOSYL-L-HOMOSELENOCYSTEINE	L - 62
1im8_A_58	1im8	A	SAIS-ADENOSYL-L-HOMOSELENOCYSTEINE	G - 63
1im8_A_58	1im8	A	MSESELENOMETHIONINE	C - 64
1im8_A_58	1im8	A	SAIS-ADENOSYL-L-HOMOSELENOCYSTEINE	C - 64
1im8_A_58	1im8	A	MSESELENOMETHIONINE	S - 65
1im8_A_58	1im8	A	SAIS-ADENOSYL-L-HOMOSELENOCYSTEINE	S - 65
1im8_A_58	1im8	A	MSESELENOMETHIONINE	R - 66
1im8_A_58	1im8	A	SAIS-ADENOSYL-L-HOMOSELENOCYSTEINE	R - 66
1im8_A_58	1im8	A	SAIS-ADENOSYL-L-HOMOSELENOCYSTEINE	G - 67
1im8_A_58	1im8	A	SAIS-ADENOSYL-L-HOMOSELENOCYSTEINE	A - 68
1im8_A_58	1im8	A	SAIS-ADENOSYL-L-HOMOSELENOCYSTEINE	A - 69
1im8_A_58	1im8	A	SAIS-ADENOSYL-L-HOMOSELENOCYSTEINE	T - 70
1im8_A_58	1im8	A	MSESELENOMETHIONINE	S - 72
1im8_A_58	1im8	A	MSESELENOMETHIONINE	A - 73
1ne2_A_51	1ne2	A	MSESELENOMETHIONINE	I - 53
1ne2_A_51	1ne2	A	MSESELENOMETHIONINE	D - 54
1ne2_A_51	1ne2	A	MSESELENOMETHIONINE	A - 55
1ne2_A_51	1ne2	A	MSESELENOMETHIONINE	T - 57
1ne2_A_51	1ne2	A	MSESELENOMETHIONINE	L - 62
1nv8_A_124	1nv8	A	SAMS-ADENOSYLMETHIONINE	D - 127
1nv8_A_124	1nv8	A	SAMS-ADENOSYLMETHIONINE	I - 128
1nv8_A_124	1nv8	A	SAMS-ADENOSYLMETHIONINE	G - 129
1nv8_A_124	1nv8	A	SAMS-ADENOSYLMETHIONINE	T - 130
1nv8_A_124	1nv8	A	SAMS-ADENOSYLMETHIONINE	G - 131
1nv8_A_124	1nv8	A	SAMS-ADENOSYLMETHIONINE	S - 132
1nv8_A_124	1nv8	A	SAMS-ADENOSYLMETHIONINE	G - 133
1nv8_A_124	1nv8	A	SAMS-ADENOSYLMETHIONINE	A - 134
1nv8_A_124	1nv8	A	SAMS-ADENOSYLMETHIONINE	I - 135
1qzz_A_185	1qzz	A	ACTACETATE ION	D - 188
1qzz_A_185	1qzz	A	SAMS-ADENOSYLMETHIONINE	D - 188
1qzz_A_185	1qzz	A	ACTACETATE ION	V - 189
1qzz_A_185	1qzz	A	SAMS-ADENOSYLMETHIONINE	V - 189
1qzz_A_185	1qzz	A	ACTACETATE ION	G - 190
1qzz_A_185	1qzz	A	SAMS-ADENOSYLMETHIONINE	G - 190
1qzz_A_185	1qzz	A	ACTACETATE ION	G - 191
1qzz_A_185	1qzz	A	SAMS-ADENOSYLMETHIONINE	G - 191
1qzz_A_185	1qzz	A	ACTACETATE ION	G - 192
1qzz_A_185	1qzz	A	SAMS-ADENOSYLMETHIONINE	G - 192
1qzz_A_185	1qzz	A	ACTACETATE ION	N - 193
1qzz_A_185	1qzz	A	SAMS-ADENOSYLMETHIONINE	N - 193
1qzz_A_185	1qzz	A	ACTACETATE ION	G - 194
1qzz_A_185	1qzz	A	ACTACETATE ION	G - 195
1qzz_A_185	1qzz	A	SAMS-ADENOSYLMETHIONINE	G - 195
1qzz_A_185	1qzz	A	ACTACETATE ION	M - 196
1qzz_A_185	1qzz	A	SAMS-ADENOSYLMETHIONINE	M - 196
1qzz_A_185	1qzz	A	ACTACETATE ION	L - 197
1qzz_A_185	1qzz	A	ACTACETATE ION	A - 198
6mht_A_13	6mht	A	SAMS-ADENOSYLMETHIONINE	L - 17
6mht_A_13	6mht	A	SAMS-ADENOSYLMETHIONINE	F - 18
6mht_A_13	6mht	A	SAMS-ADENOSYLMETHIONINE	A - 19
6mht_A_13	6mht	A	SAMS-ADENOSYLMETHIONINE	G - 20
6mht_A_13	6mht	A	SAMS-ADENOSYLMETHIONINE	L - 21
6mht_A_13	6mht	A	SAMS-ADENOSYLMETHIONINE	G - 22
6mht_A_13	6mht	A	SAMS-ADENOSYLMETHIONINE	G - 23
6mht_A_13	6mht	A	SAMS-ADENOSYLMETHIONINE	F - 24

Clusters included in this Subclass

CLUSTER: EH.4.117