ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 5.14.1

Subclass Accession number: 3239
Subclass: 5.14.1

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 9

Average sequence ID (%) : 15.5 +/- 22.6
Average RMSD (Å) : 1.144 +/- 0.201

Consensus geometry

d (Å): 15

delta (°): 0-45

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	hhXXhXpXp
(φψ)-conformation:	bbppbabaa

Pattern:	[cg]	[agiv]	x	[ehpr]	[ACIV]	x	[DEGNRS]	x	[ekry]	x	[acl]	x	[DEKNR]	x
Conservation:	1.065	0.057	-0.140	-0.120	1.600	-0.814	0.466	-0.220	0.410	-1.359	0.063	-0.858	1.593	-1.745

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b5t_A_207	1b5t	A	210	223	GILPVSNFKQAKKF	EE---S-HHHHHHH	xbbwbabaaaaaaa
1bgx_T_331	1bgx	T	331	344	RVHRAPEPYKALRD	EEE--S-HHHHHHH	bxbxbabaaaaaaa
1djt_A_12	1djt	A	12	25	CVYECARNEYCNDL	EE---SSHHHHHHH	bxxxbabaaaaaaa
1eov_A_477	1eov	A	482	495	GAQRIHDHALLQER	EEEB---HHHHHHH	bbxxxaxaaaaaaa
1kv0_A_12	1kv0	A	12	25	CAYGCLNNEYCNNL	EE-B-S-HHHHHHH	bxxxbabaaaaaaa
1l0w_A_475	1l0w	A	480	493	GSIRIHDPRLQARV	EEEB---HHHHHHH	bbxxxaxaaaaaaa
1n9w_A_344	1n9w	A	349	362	GGQRIHRYEELLES	EEEB---HHHHHHH	bexbxaxaaaaaaa
1sn4_A_12	1sn4	A	12	25	CVYHCAGNEGCNKL	EE-B-S-HHHHHHH	bxbxbabaaaaaaa
1v93_A_204	1v93	A	207	220	GIMPVTSYRQLRRF	EE-----HHHHHHH	xbbxxabaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1sn4_A_12	1sn4	A	ACTACETATE ION	A - 17
1sn4_A_12	1sn4	A	ACTACETATE ION	G - 18
1sn4_A_12	1sn4	A	ACTACETATE ION	N - 19
1sn4_A_12	1sn4	A	ACTACETATE ION	E - 20
1sn4_A_12	1sn4	A	ACTACETATE ION	K - 24
1sn4_A_12	1sn4	A	ACTACETATE ION	T - 27
1sn4_A_12	1sn4	A	ACTACETATE ION	D - 28

Clusters included in this Subclass

CLUSTER: EH.5.55