ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 4.34.1

Subclass Accession number: 328
Subclass: 4.34.1

Type: HE alpha-beta
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 1.2 (>75 %)  1.2.1 (>75 %)
GO : GO:0004028 (>75 %)  GO:0016620 (>75 %)  GO:0016903 (>75 %)
SCOP : 53719 (>75 %)  53720 (>75 %)  53721 (>75 %)

Number of loops: 4

Average sequence ID (%) : 16.7 +/- 15.4
Average RMSD (Å) : 1.050 +/- 0.265

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	pXGXpphX
(φψ)-conformation:	aalbaabb

Pattern:	[LV]	[EGKS]	[DER]	[FLT]	x	x	x	x	[HR]	[EKR]	[ER]	[FLTV]	[GQ]	x	[DE]	[DHKT]	x	[AK]	[ILV]	[AGNV]	x
Conservation:	1.130	-0.530	0.459	-0.283	-0.785	-0.746	-0.963	-1.071	1.521	0.825	0.878	-0.584	1.131	-1.396	2.071	-0.746	-0.476	0.242	0.976	-1.071	-0.584

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1aor_A_142	1aor	A	142	162	VSETEATIRKEVGSEKVKIAS	HHHHHHHHHHHHT-S--EEEE	aaaaaaaaaaaavbaapbbbb
1dp4_A_130	1dp4	A	133	153	LGDFVTALHRRLGWEHQALVL	HHHHHHHHHHHHT--SEEEEE	aaaaaaaaaaaavxaabbbbb
1e3m_A_443	1e3m	A	447	467	LERLEVRERERTGLDTLKVGF	HHHHHHHHHHHHT-TT-EEEE	aaaaaaaaaaaavxaapbbbb
1oey_J_267	1oey	J	267	287	LKDLLELTRREFQREDIALNY	HHHHHHHHHHHH--SSEEEEE	aaaaaaaaaaaalbaabbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1oey_J_267	1oey	J	MSESELENOMETHIONINE	L - 270
1oey_J_267	1oey	J	MSESELENOMETHIONINE	N - 286
1oey_J_267	1oey	J	MSESELENOMETHIONINE	Y - 287

Clusters included in this Subclass

CLUSTER: HE.4.126