ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 8.11.1

Subclass Accession number: 3488
Subclass: 8.11.1

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 5

Average sequence ID (%) : 47.0 +/- 25.1
Average RMSD (Å) : 0.280 +/- 0.084

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	LpGGXphhXGhX
(φψ)-conformation:	bbeaaaapplaa

Pattern:	[FV]	[LM]	[ST]	[G]	[G]	[GST]	[ST]	[LM]	[FLY]	[PR]	[DG]	[FIL]	[ADGP]	[DRST]	x	[LM]	[ENQ]	[KR]	[DE]	[ILT]
Conservation:	-0.561	0.333	-0.009	2.266	2.266	-0.886	0.208	0.526	-0.033	-0.572	0.139	-0.498	-1.570	-1.415	-0.746	0.300	-0.194	0.531	0.722	-0.807

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1jce_A_281	1jce	A	282	301	FLTGGGSLLRGLDTLLQKET	EEESGGG-SBTHHHHHHHHH	xbbeaaaappvaaaaaaaaa
1k8k_A_319	1k8k	A	320	339	VLSGGSTMFRDFGRRLQRDL	EEESGGG-STTHHHHHHHHH	bbbeaaaaxpvaaaaaaaaa
1k8k_B_302	1k8k	B	302	321	VLSGGSTMYPGLPSRLEREL	EEESGGG-STTHHHHHHHHH	bxbeaaaappvaaaaaaaaa
1nm1_A_297	1nm1	A	298	317	VLSGGTTMFPGIADRMNKEL	EEESGGG-STTHHHHHHHHH	bxbeaaaaxpvaaaaaaaaa
1qz5_A_297	1qz5	A	298	317	VMSGGTTMYPGIADRMQKEI	EEESGGG-STTHHHHHHHHH	bxbeaaaappvaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1jce_A_281	1jce	A	MSESELENOMETHIONINE	I - 281
1jce_A_281	1jce	A	MSESELENOMETHIONINE	F - 282
1jce_A_281	1jce	A	MSESELENOMETHIONINE	L - 283
1jce_A_281	1jce	A	MSESELENOMETHIONINE	G - 287
1jce_A_281	1jce	A	MSESELENOMETHIONINE	S - 288
1jce_A_281	1jce	A	MSESELENOMETHIONINE	L - 290
1nm1_A_297	1nm1	A	ATPADENOSINE-5'-TRIPHOSPHATE	S - 300
1nm1_A_297	1nm1	A	MGMAGNESIUM ION	G - 301
1nm1_A_297	1nm1	A	ATPADENOSINE-5'-TRIPHOSPHATE	G - 301
1nm1_A_297	1nm1	A	ATPADENOSINE-5'-TRIPHOSPHATE	G - 302
1nm1_A_297	1nm1	A	ATPADENOSINE-5'-TRIPHOSPHATE	T - 303
1nm1_A_297	1nm1	A	ATPADENOSINE-5'-TRIPHOSPHATE	T - 304
1nm1_A_297	1nm1	A	ATPADENOSINE-5'-TRIPHOSPHATE	M - 305
1nm1_A_297	1nm1	A	ATPADENOSINE-5'-TRIPHOSPHATE	F - 306
1nm1_A_297	1nm1	A	ATPADENOSINE-5'-TRIPHOSPHATE	P - 307
1qz5_A_297	1qz5	A	ATPADENOSINE-5'-TRIPHOSPHATE	Y - 306

Clusters included in this Subclass

CLUSTER: EH.7.54