Information on SUBCLASS 5.3.2 |
Subclass Accession number: 354
Subclass: 5.3.2 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0003676 (>75 %) |
Number of loops: 6 Average sequence ID (%) : 14.0 +/- 14.3 Average RMSD (Å) : 1.183 +/- 0.194 Consensus geometry
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Consensus Sequence: | XXcXXhpXh |
(φψ)-conformation: | aalbbpabb |
Pattern: | [degt] | [kqrt] | [aflvy] | [fikmt] | x | x | [mvwy] | x | [egnrs] | [EKL] | [GN] | x | [AKV] | [PY] | [DHKT] | x | [FHMVWY] | [ailv] | x |
Conservation: | -0.632 | 0.052 | -0.559 | -0.559 | -0.566 | -0.570 | 0.016 | -0.580 | -0.883 | 0.305 | 3.137 | -0.160 | 0.222 | 1.646 | 0.600 | -0.948 | 0.251 | 0.272 | -1.045 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a8h_*_76 | 1a8h | - | 76 | 94 | GRFKRAWDLLGIAYDDFIR | HHHHHHHHHTT---SEEEE | aaaaaaaaaavxbxabbxb |
1f7u_A_260 | 1f7u | A | 275 | 293 | EKYIDTYARLNIKYDVYSG | HHHHHHHHHTT---SEEEE | aaaaaaaaaalbbxabbxe |
1jye_A_222 | 1jye | A | 226 | 244 | FQQTMQMLNEGIVPTAMLV | HHHHHHHHHTT---SEEEE | aaaaaaaaaavxbxabbbb |
1jyh_A_22 | 1jyh | A | 31 | 49 | EQLMMWVDSKNIVPKEWVA | HHHHHHHHHTT---SEEEE | aaaaaaaaaalxbxabbbb |
1l5x_A_70 | 1l5x | A | 72 | 90 | DTVYLATFGLGRKYDIVLS | HHHHHHHHHHTS--SEEEE | aaaaaaaaaavbxxabbbb |
1v7c_A_166 | 1v7c | A | 166 | 184 | TLAFEVVDELGDAPHYHAL | HHHHHHHHHHSS--SEEEE | aaaaaaaaaavbxxabbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1l5x_A_70 | 1l5x | A | MSESELENOMETHIONINE | L - 76 |
1l5x_A_70 | 1l5x | A | GOLGLYCEROL | L - 76 |
1l5x_A_70 | 1l5x | A | MSESELENOMETHIONINE | A - 77 |
1l5x_A_70 | 1l5x | A | GOLGLYCEROL | A - 77 |
1l5x_A_70 | 1l5x | A | GOLGLYCEROL | T - 78 |
1l5x_A_70 | 1l5x | A | MSESELENOMETHIONINE | F - 79 |
1l5x_A_70 | 1l5x | A | MSESELENOMETHIONINE | G - 80 |
1l5x_A_70 | 1l5x | A | GOLGLYCEROL | G - 80 |
1l5x_A_70 | 1l5x | A | GOLGLYCEROL | L - 81 |
1l5x_A_70 | 1l5x | A | GOLGLYCEROL | Y - 85 |
1l5x_A_70 | 1l5x | A | MSESELENOMETHIONINE | D - 86 |
1l5x_A_70 | 1l5x | A | MSESELENOMETHIONINE | I - 92 |
1v7c_A_166 | 1v7c | A | HEY(2E)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL] PYRIDIN-4-YL}METHYL)AMINO]-5-PHOSPHONOPENT-2-ENOIC ACID | P - 185 |
Clusters included in this Subclass |
CLUSTER: HE.5.67 |