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Information on SUBCLASS 5.4.1
Subclass Accession number: 356
Subclass: 5.4.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 53382 (>75 %)  53383 (>75 %)  
 Number of loops: 17

Average sequence ID (%) : 14.6 +/- 16.4
Average RMSD (Å) : 0.818 +/- 0.319

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: pXXXphpXX
(φψ)-conformation: aabaappbb
Pattern: xx[fhilmvy][aklv][aeknqrst]xx[KPQR][degkqs][agilmtv][deknpqst][fikltv]x
Conservation:-1.229-0.5580.275-0.013-0.458-0.451-0.0122.9220.490-0.359-0.1650.354-0.794
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1byk_A_2681byk   A268280PLMKFLHPEIVTVHHHHHH-TTSEEEaaaaaabaaxxbb
1ckq_A_351ckq   A4456KALSNEYPQLSFRHHHHHH-TTS-EEaaaaaabaabbbb
1cnz_A_2001cnz   A210222NDVAKTYPDVELAHHHHTT-TTSEEEaaaaaabaabxbb
1edq_A_2511edq   A257269MALKQAHPDLKILHHHHHH-TT-EEEaaaaaabaaxxbb
1fzr_A_721fzr   A7991LLIREQHPELDIRHHHHHH-TT-EEEaaaaaabaaxbbb
1g55_A_371g55   A4153EVYKYNFPHTQLLHHHHHH-TTS-EEaaaaaabaabxbb
1gpe_A_341gpe   A4052AAKLTENPKIKVLHHHHHTSTT--EEaaaaaaxaaxxbb
1itz_A_5091itz   A516528YKVAVLNRKRPSIHHHHHH-TTS-EEaaaaaaxaabxbb
1k1x_A_311k1x   A3547MEILEEFPEMKVNHHHHTT-TT--EEaaaaaabaaxbbb
1kfw_A_1121kfw   A118130KQLKAKNPKLKVMHHHHTT-TT-EEEaaaaaabaaxbbb
1llf_A_4161llf   A420432RYFLNHFQGGTKYHHHHHH--SS-EEaaaaaaxaabpbb
1oap_A_641oap   A7183ANFLRSNPSYKVTHHHHHT-TT--EEaaaaaabaaxbbb
1p99_A_951p99   A99111DQYKKAHKGTKISHHHHHH-TT--EEaaaaaabaabbbb
1pda_*_1301pda   -134146CQLAERRPDLIIRHHHHHH-TTSEEEaaaaaabaaxbbb
1pn0_A_171pn0   A2739SEYVRQKPDLKVRHHHHHHSTT--EEaaaaaabaaxbbb
1qtr_A_2731qtr   A277289WDLAKAWPEAELHHHHHHH-TTSEEEaaaaaabaaxxxb
2bce_*_3942bce   -402414AQHKSHAKSANTYHHHHHH-SS--EEaaaaaapaabxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1g55_A_371g55   A     SAHS-ADENOSYL-L-HOMOCYSTEINE A - 39
1gpe_A_341gpe   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 34
1gpe_A_341gpe   A     FADFLAVIN-ADENINE DINUCLEOTIDE T - 35
1gpe_A_341gpe   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 36
1gpe_A_341gpe   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 54
1gpe_A_341gpe   A     FADFLAVIN-ADENINE DINUCLEOTIDE E - 55
1kfw_A_1121kfw   A     GOLGLYCEROL L - 120
1kfw_A_1121kfw   A     GOLGLYCEROL K - 123
1kfw_A_1121kfw   A     GOLGLYCEROL N - 124
1p99_A_951p99   A     METMETHIONINE F - 97
1p99_A_951p99   A     GLYGLYCINE V - 117
1p99_A_951p99   A     METMETHIONINE V - 117
1p99_A_951p99   A     METMETHIONINE L - 118
1pda_*_1301pda   *     DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID L - 130
1pda_*_1301pda   *     DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID R - 131
1pda_*_1301pda   *     DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID R - 132
1pn0_A_171pn0   A     FADFLAVIN-ADENINE DINUCLEOTIDE P - 17
1pn0_A_171pn0   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 18
1pn0_A_171pn0   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 19
1pn0_A_171pn0   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 41

Clusters included in this Subclass
CLUSTER: HE.4.50
CLUSTER: HE.5.126
CLUSTER: HE.5.46
CLUSTER: HE.6.25
CLUSTER: HE.6.76
CLUSTER: HE.7.72