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Information on SUBCLASS 5.9.1
Subclass Accession number: 366
Subclass: 5.9.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 9.5 +/- 12.1
Average RMSD (Å) : 1.200 +/- 0.361

Consensus geometry
d (Å): 17 delta (°): 135-180 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: ppcXXXhXX
(φψ)-conformation: aalbpppbb
Pattern: xx[ans]xxxxxx[DKNQRSTY]x[dgr]x[ehprs][alptv]xxxx
Conservation:-0.351-0.9342.051-0.105-0.5040.064-0.681-0.6700.6420.523-0.0862.513-0.8040.517-0.018-1.3040.135-0.990-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b9h_A_1421b9h   A142159MDALAKISADTGVPLLQD.HHHHHHHHHHHT--B-EE.aaaaaaaaaaavbxxbxx.
1di2_A_1131di2   A114132VGSLQELAVQKGWRLPEYTHHHHHHHHHHHT----EEEaaaaaaaaaaavxxxpbbb
1gkz_A_1971gkz   A206224DFARRLCEHKYGNAPRVRIHHHHHHHHHHHS----EEEaaaaaaaaaaavbbxxbbb
1gt9_1_391gt9   13957ETSLAQYFASLGVSAPQVVHHHHHHHHHHTT-----EEaaaaaaaaaaavbxxxxbb
1hkk_A_1511hkk   A163181ANAFQQEAQTSGKERLLLSHHHHHHHHHHH-S---EEEaaaaaaaaaaavxxxxxbb
1jm6_A_11891jm6   A11981216DMAKLLCDKYYMASPDLEIHHHHHHHHHHHS----EEEaaaaaaaaaaavbbxxbbb
1mdo_A_1431mdo   A143160LDAIYALGERYGIPVIED.HHHHHHHHHHHT--B-EE.aaaaaaaaaaavbpbbxx.
1qhd_A_1341qhd   A134152EYIENWNLQNRRQRTGFTFHHHHHHHHHHTT----EEEaaaaaaaaaaalbxbbbxb
1vhv_A_1411vhv   A142160PVNVIKANRSIDAHTLLFLHHHHHHHHHHTT-BB-EEEaaaaaaaaaaavbxbxbxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b9h_A_1421b9h   A     PLPPYRIDOXAL-5'-PHOSPHATE D - 159
1hkk_A_1511hkk   A     AMIALLOSAMIZOLINE A - 183
1hkk_A_1511hkk   A     AMIALLOSAMIZOLINE P - 185
1mdo_A_1431mdo   A     MSESELENOMETHIONINE I - 158
1mdo_A_1431mdo   A     MSESELENOMETHIONINE E - 159
1mdo_A_1431mdo   A     MSESELENOMETHIONINE D - 160
1mdo_A_1431mdo   A     PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE D - 160
1qhd_A_1341qhd   A     CACALCIUM ION E - 134
1qhd_A_1341qhd   A     CACALCIUM ION Q - 142
1qhd_A_1341qhd   A     CACALCIUM ION T - 148
1qhd_A_1341qhd   A     CACALCIUM ION F - 150
1qhd_A_1341qhd   A     CACALCIUM ION T - 151
1qhd_A_1341qhd   A     CACALCIUM ION F - 152
1qhd_A_1341qhd   A     ZNZINC ION H - 153
1qhd_A_1341qhd   A     CACALCIUM ION H - 153
1vhv_A_1411vhv   A     MSESELENOMETHIONINE V - 143
1vhv_A_1411vhv   A     MSESELENOMETHIONINE I - 146
1vhv_A_1411vhv   A     MSESELENOMETHIONINE K - 147
1vhv_A_1411vhv   A     MSESELENOMETHIONINE T - 156
1vhv_A_1411vhv   A     MSESELENOMETHIONINE L - 157
1vhv_A_1411vhv   A     MSESELENOMETHIONINE L - 158
1vhv_A_1411vhv   A     MSESELENOMETHIONINE F - 159
1vhv_A_1411vhv   A     MSESELENOMETHIONINE L - 160
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1hkk_A_1511hkk   A AC3AMI BINDING SITE FOR CHAIN AA - 183
1qhd_A_1341qhd   A ZNBTHE ZINC SITS ON A THREE-FOLD AXIS. THE ZINC BINDING SITE FORMED BY THREE SYMMETRICALLY-RELATED PLUS ONE WATER MOLECULE ON THE THREE-FOLD AXIS.H - 153

Clusters included in this Subclass
CLUSTER: HE.5.118
CLUSTER: HE.6.21