Information on SUBCLASS 3.5.2 |
Subclass Accession number: 3796
Subclass: 3.5.2 Type: AR beta-beta link DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 29 Average sequence ID (%) : 14.9 +/- 16.8 Average RMSD (Å) : 0.579 +/- 0.227 Consensus geometry
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Consensus Sequence: | hXhcpXh |
(φψ)-conformation: | bbplpbb |
Pattern: | x | x | x | [acfgilmtv] | x | x | [adgnqs] | [adeknqrst] | x | [cfgilpvy] | [deknqstwy] |
Conservation: | -1.000 | -1.000 | -1.056 | 0.699 | -1.138 | -0.393 | 1.770 | 0.721 | -0.612 | 0.684 | -0.674 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1aoz_A_419 | 1aoz | A | 419 | 428 | .YQFKIGEVVD | .EEE-TT-EEE | .xbbxxgxxbb |
1ay1_H_11 | 1ay1 | H | 11 | 19 | ..LVKPYQSLS | ..EE-TTS-EE | ..bbxxvxbbb |
1bdy_A_58 | 1bdy | A | 60 | 70 | DAHIYEGRVIQ | EEE--TT-EEE | bbxxbxvxbbb |
1bxu_A_18 | 1bxu | A | 18 | 28 | TIEIQAGDTVQ | EEEE-TT-EEE | bbbbbpvxbbb |
1ciu_*_508 | 1ciu | - | 508 | 516 | ..MTKAGQTIT | ..EE-TT-EEE | ..bbbpvxbbb |
1e2w_A_38 | 1e2w | A | 38 | 46 | ..AVLPDTVFE | ..EE-TT-EEE | ..bbxxlbxbb |
1flt_X_144 | 1flt | X | 145 | 155 | IIHMTEGRELV | EEEE-TTS-EE | xbxbbpvbxbb |
1gtt_A_52 | 1gtt | A | 52 | 61 | .IPFPQGEKVL | .EEE-TT--EE | .xxxxxgxbbb |
1ivl_A_10 | 1ivl | A | 10 | 20 | TLSVTPGNSVS | EEEE-TT-EEE | bbbbbpvxbbb |
1kya_A_371 | 1kya | A | 371 | 381 | VYSLPSNADIE | EEEE-SS-EEE | bbxbxxlbxbb |
1m4k_A_117 | 1m4k | A | 117 | 125 | ..TVLAGESVT | ..EE-TTSEEE | ..bbxpvxxbb |
1nkr_*_117 | 1nkr | - | 117 | 125 | ..TVLAGENVT | ..EE-TT-EEE | ..bbxpgxxxb |
1o4t_A_93 | 1o4t | A | 93 | 103 | VCFTDSGESHS | EEEE-TT-EEE | bbbbxpvxbbb |
1oaq_L_9 | 1oaq | L | 9 | 19 | ALTTSPGETVT | EEEE-TT-EEE | bbbbbpvxxbb |
1od5_A_121 | 1od5 | A | 122 | 132 | VLVIPPGVPYW | EEEE-TT--EE | bbbbxpvbwbb |
1paz_*_22 | 1paz | - | 22 | 32 | YIKANPGDTVT | EEEE-TT-EEE | bbbbbpvxbbb |
1plc_*_18 | 1plc | - | 18 | 28 | EFSISPGEKIV | EEEE-TT-EEE | bbbbxpvxxbb |
1pmy_*_22 | 1pmy | - | 22 | 32 | LVRLKPGDSIK | EEEE-TT-EEE | bbbbbpgxbbb |
1qwr_A_153 | 1qwr | A | 156 | 166 | RIKIKPGDFYY | EEE--TT-EEE | bbxbbpvxbbx |
1suu_A_651 | 1suu | A | 654 | 664 | AEIVFKDEKVI | EEEE-TT-EEE | bbbbbpvxxbx |
1uol_A_132 | 1uol | A | 132 | 142 | KLFCQLAKTCP | EEEE-TT--EE | bxbbxplxxbw |
1uxz_A_29 | 1uxz | A | 31 | 41 | VGYIDAGDWLS | EE---TT-EEE | xblxbpgxbbb |
1xnb_*_163 | 1xnb | - | 169 | 179 | MATEGYQSSGS | EEEEEES-EEE | xbbbbblbbeb |
1ygs_*_427 | 1ygs | - | 427 | 436 | .HKIYPSAYIK | .EEE-TT-EEE | .bxbxpvxbbx |
1zxq_*_99 | 1zxq | - | 99 | 107 | ..LVAVGKSFT | ..EE-TTSEEE | ..bbxpvbxbb |
2bbk_H_57 | 2bbk | H | 61 | 71 | MIDGGFLPNPV | EEEE-SS-EEE | bbxbFxlxbwb |
2plt_*_18 | 2plt | - | 18 | 28 | TLTIKSGETVN | EEEE-TT-EEE | bbbbxpvxbbb |
2reb_*_56 | 2reb | - | 56 | 63 | ...LPMGRIVE | ...EETTSEEE | ...xxxvbxbb |
7pcy_*_18 | 7pcy | - | 18 | 28 | NITVGAGESIE | EEEE-TT-EEE | bbbbxxvxxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1kya_A_371 | 1kya | A | NAGN-ACETYL-D-GLUCOSAMINE | E - 381 |
1kya_A_371 | 1kya | A | NAGN-ACETYL-D-GLUCOSAMINE | S - 383 |
1o4t_A_93 | 1o4t | A | MNMANGANESE (II) ION | H - 102 |
1o4t_A_93 | 1o4t | A | OXLOXALATE ION | H - 102 |
1od5_A_121 | 1od5 | A | CO3CARBONATE ION | Y - 131 |
1od5_A_121 | 1od5 | A | CO3CARBONATE ION | W - 132 |
1od5_A_121 | 1od5 | A | CO3CARBONATE ION | T - 133 |
1qwr_A_153 | 1qwr | A | MSESELENOMETHIONINE | L - 153 |
1qwr_A_153 | 1qwr | A | ZNZINC ION | V - 167 |
1zxq_*_99 | 1zxq | * | NAGN-ACETYL-D-GLUCOSAMINE | F - 106 |
1zxq_*_99 | 1zxq | * | NAGN-ACETYL-D-GLUCOSAMINE | T - 107 |
2plt_*_18 | 2plt | * | CACALCIUM ION | T - 18 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1od5_A_121 | 1od5 | A | AC1CO3 BINDING SITE FOR CHAIN A | Y - 131 |
1od5_A_121 | 1od5 | A | AC1CO3 BINDING SITE FOR CHAIN A | T - 133 |
1uol_A_132 | 1uol | A | MUAMUTATION SITE FOR CHAIN A | L - 133 |
Clusters included in this Subclass |
CLUSTER: AR.3.62 |
CLUSTER: AR.4.29 |
CLUSTER: AR.5.12 |