ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.24.1

Subclass Accession number: 385
Subclass: 5.24.1

Type: HE alpha-beta
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 3.4 (>75 %)
GO : GO:0004177 (>75 %)  GO:0008233 (>75 %)  GO:0008238 (>75 %)
SCOP : 53162 (>75 %)  53187 (>75 %)  53204 (>75 %)

Number of loops: 4

Average sequence ID (%) : 19.9 +/- 18.8
Average RMSD (Å) : 0.925 +/- 0.330

Consensus geometry

d (Å): 17

delta (°): 90-135

theta (°): 135-180

rho (°): 225-270

Consensus Sequence:	phGXpPpXp
(φψ)-conformation:	aalpbpabp

Pattern:	[GPT]	x	x	[AST]	[ALV]	x	x	[GITV]	[AIMY]	x	[ALVY]	[LVY]	[KNS]	[EQR]	[ANV]	[GN]	[FRY]	[KQ]	[P]	[DKT]	[KMR]	[HKS]	[ILW]	[ADRS]	[FT]	[AIMV]
Conservation:	-0.471	-0.818	-0.375	0.183	-0.086	-1.017	-0.604	-0.971	-0.743	-0.260	-0.697	-0.095	0.183	0.584	-0.715	1.448	0.175	0.994	3.908	-0.298	0.196	-0.038	-0.173	-0.789	0.629	-0.150

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1hrk_A_199	1hrk	A	199	224	TGSSLNAIYRYYNQVGRKPTMKWSTI	HHHHHHHHHHHHHHHTS--SSEEEEE	aaaaaaaaaaaaaaavbxxabxxbbb
1lfw_A_121	1lfw	A	123	148	PSLTAYYGMLLLKEAGFKPKKKIDFV	HHHHHHHHHHHHHHHT---SSEEEEE	aaaaaaaaaaaaaaavxbpabxbbxb
1qq9_A_99	1qq9	A	101	126	GSAAVLETALAVSRAGYQPDKHLRFA	HHHHHHHHHHHHHHHT---SEEEEEE	aaaaaaaaaaaaaaavxbxaxxxbbb
1rtq_A_119	1rtq	A	121	146	GIAAVTEVIRVLSENNFQPKRSIAFM	HHHHHHHHHHHHHHTT---SEEEEEE	aaaaaaaaaaaaaaalxbxaxxbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1rtq_A_119	1rtq	A	SCNTHIOCYANATE ION	N - 135

Clusters included in this Subclass

CLUSTER: HE.5.122