ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.5.4

Subclass Accession number: 3895
Subclass: 4.5.4

PSSM

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 6

Average sequence ID (%) : 14.9 +/- 14.7
Average RMSD (Å) : 1.117 +/- 0.271

Consensus geometry

d (Å): 5

delta (°): 45-90

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	XhXXcXph
(φψ)-conformation:	bbppgpbb

Pattern:	x	[aglwy]	[AENRS]	[afgl]	[iktv]	[AFILV]	[dknp]	[LV]	[AEGR]	[aep]	[GN]	[ADT]	[ehq]	[ALV]	x	[HILVY]	x
Conservation:	-0.635	-1.088	-0.059	-1.204	-0.710	0.265	-0.814	1.871	-0.235	-0.018	2.492	0.187	0.501	0.855	-0.765	-0.048	-0.595

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1kxg_A_243	1kxg	A	246	262	YSAGIAKLEEGDELQLA	EEEEEEEE-TT-EEEEE	bbbbbbxbbpgxbbbbb
1o91_A_697	1o91	A	700	716	SGSAVLLLRPGDQVFLQ	EEEEEEEE-TT-EEEEE	bbbbxbxbbpgpbbbbb
1sox_A_411	1sox	A	412	428	LWELTVPVEAGTELEIV	EEEEEEEE-TT-EEEEE	xbbbbbwbxpvbbbbxb
1uhv_A_462	1uhv	A	462	478	YLNLKFKLGKNAVVLYE	EEEEEEEE-TTEEEEEE	bbxbbbbxxplxbbbbb
1vh4_A_166	1vh4	A	170	186	HYRHHLDLAEGAEATVI	EEEEEEEE-TT-EEEEE	bbbbbbbbxpvxbbbbb
1vh4_A_197	1vh4	A	200	216	GARFTINVAANAHLQHI	EEEEEEEE-TT-EEEEE	bbbbbbbbxpvxbbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1kxg_A_243	1kxg	A	MGMAGNESIUM ION	N - 243
1kxg_A_243	1kxg	A	MGMAGNESIUM ION	S - 244
1kxg_A_243	1kxg	A	DIO1,4-DIETHYLENE DIOXIDE	S - 244
1kxg_A_243	1kxg	A	DIO1,4-DIETHYLENE DIOXIDE	C - 245
1kxg_A_243	1kxg	A	DIO1,4-DIETHYLENE DIOXIDE	Y - 246
1kxg_A_243	1kxg	A	DIO1,4-DIETHYLENE DIOXIDE	S - 247
1kxg_A_243	1kxg	A	MGMAGNESIUM ION	K - 252
1kxg_A_243	1kxg	A	CITCITRIC ACID	K - 252
1kxg_A_243	1kxg	A	MGMAGNESIUM ION	L - 253
1kxg_A_243	1kxg	A	CITCITRIC ACID	L - 253
1kxg_A_243	1kxg	A	MGMAGNESIUM ION	E - 254
1kxg_A_243	1kxg	A	CITCITRIC ACID	E - 254
1kxg_A_243	1kxg	A	DIO1,4-DIETHYLENE DIOXIDE	G - 256
1kxg_A_243	1kxg	A	MGMAGNESIUM ION	D - 257
1kxg_A_243	1kxg	A	CITCITRIC ACID	D - 257
1kxg_A_243	1kxg	A	DIO1,4-DIETHYLENE DIOXIDE	D - 257
1kxg_A_243	1kxg	A	DIO1,4-DIETHYLENE DIOXIDE	E - 258
1kxg_A_243	1kxg	A	DIO1,4-DIETHYLENE DIOXIDE	Q - 260
1kxg_A_243	1kxg	A	DIO1,4-DIETHYLENE DIOXIDE	L - 261

Clusters included in this Subclass

CLUSTER: AR.3.141

CLUSTER: AR.4.131