ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 6.2.1

Subclass Accession number: 405
Subclass: 6.2.1

PSSM

Type: HE alpha-beta
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 15

Average sequence ID (%) : 18.0 +/- 17.9
Average RMSD (Å) : 0.753 +/- 0.329

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	pXchXXpphX
(φψ)-conformation:	aagppaaabb

Pattern:	[afgikltv]	[agilm]	x	[adekqrs]	x	[acilwy]	[aikltv]	[dkqrsty]	[aknqt]	[ADGKQ]	[fikltv]	[DEHKPS]	x	[ADEGNRS]	[EHKNQRS]	[ILV]	x	[AFILTV]
Conservation:	-1.003	-0.360	-0.768	0.376	-1.131	-1.097	-0.514	-0.382	-0.667	1.450	0.341	0.366	-0.255	0.282	1.000	2.747	-0.775	0.389

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1auo_A_81	1auo	A	93	110	DLIEAQKRTGIDASRIFL	HHHHHHHHTT--GGGEEE	aaaaaaaaavxxaaabbb
1bu6_O_49	1bu6	O	59	76	TLVEVLTKADISSDQIAA	HHHHHHHHHT--GGGEEE	aaaaaaaaavbxaaaxab
1d2k_A_269	1d2k	A	271	288	KAVKDYIKAGVPANKIVL	HHHHHHHHTT--GGGEEE	aaaaaaaaagxxaaaxxx
1euv_B_46	1euv	B	48	65	LMEAFAKRQGKEMDSLRF	HHHHHHHHTT--GGGEEE	aaaaaaaaavbxaaabbb
1fj2_A_81	1fj2	A	93	110	ALIDQEVKNGIPSNRIIL	HHHHHHHHTT--GGGEEE	aaaaaaaaagbxaaabbb
1hkk_A_243	1hkk	A	245	262	AAVQQWLQKGTPASKLIL	HHHHHHHHTT--GGGEEE	aaaaaaaaagxwaaaxbx
1isp_A_20	1isp	A	21	38	GIKSYLVSQGWSRDKLYA	HHHHHHHHTT--GGGEEE	aaaaaaaaagxxaaabbb
1itx_A_314	1itx	A	316	333	AGAQGHLDAGVPAAKLVL	HHHHHHHHHT--GGGEEE	aaaaaaaaagxxaaabbx
1jlr_A_171	1jlr	A	175	192	KAIEVLLRLGVKEERIIF	HHHHHHHHTT--GGGEEE	aaaaaaaaagxxaaaxbx
1jnd_A_255	1jnd	A	257	274	FQVEYWLSQGFPSNKINL	HHHHHHHHTT--GGGEEE	aaaaaaaaagxxaaabbx
1l1q_A_131	1l1q	A	135	152	AAIELCETAGVKPENIYI	HHHHHHHHTT--GGGEEE	aaaaaaaaagxxaaabbb
1qzm_A_506	1qzm	A	506	523	LLPKQIERNALKKGELTV	HHHHHHHHTT--TTTEEE	aaaaaaaaavbxaaabbb
1ryb_A_70	1ryb	A	73	90	AIGPLAAYYQVPLRHILL	HHHHHHHHTT--GGGEEE	aaaaaaaaalxxaaaxxb
1szw_A_55	1szw	A	58	75	VADALAKFLKIHAREVSF	HHHHHHHHTT--GGGEEE	aaaaaaaaalbpaaabbb
2rsl_A_13	2rsl	A	18	35	IQVRALKDAGVKANRIFT	HHHHHHHHTT--GGGEEE	aaaaaaaaagxpaaaxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1bu6_O_49	1bu6	O	GOLGLYCEROL	N - 81
1jlr_A_171	1jlr	A	PO4PHOSPHATE ION	G - 171
1jlr_A_171	1jlr	A	PO4PHOSPHATE ION	S - 172
1jlr_A_171	1jlr	A	PO4PHOSPHATE ION	V - 173
1jnd_A_255	1jnd	A	NAGN-ACETYL-D-GLUCOSAMINE	F - 257
1jnd_A_255	1jnd	A	NAGN-ACETYL-D-GLUCOSAMINE	Q - 258
1jnd_A_255	1jnd	A	NAGN-ACETYL-D-GLUCOSAMINE	Y - 261

Clusters included in this Subclass

CLUSTER: HE.6.22

CLUSTER: HE.7.8

CLUSTER: HE.8.0