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Information on SUBCLASS 6.2.5
Subclass Accession number: 409
Subclass: 6.2.5 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005386 (>75 %)  
 Number of loops: 4

Average sequence ID (%) : 10.1 +/- 12.0
Average RMSD (Å) : 1.275 +/- 0.419

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: pXGhXppphX
(φψ)-conformation: aagppaaabb
Pattern: x[DNQR]x[AITV][ENQT]xxx[DEG][AS][CIL]x[AKRT]x[G][CFIL][EPS][EHKP][KRS]x[ILY]xx
Conservation:-0.6590.077-0.320-0.0700.028-1.101-0.218-0.7080.6390.9610.498-1.150-0.267-0.8553.707-0.0700.337-0.1690.268-0.7080.390-0.610-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1gkl_A_9871gkl   A9881010QDKANSIAEAINRSGLSKREYFVHHHHHHHHHHHHHHT--TTS-EEaaaaaaaaaaaaaavxxaaabbb
1in0_A_551in0   A5980EQLIEILIGSCIKRGIEHSSLD.HHHHHHHHHHHHHTT--GGGEE.aaaaaaaaaaaaaalxxaaaxx.
1ry9_A_41ry9   A426INLVQLVRDSLFTIGCPPSIITDHHHHHHHHHHHHHHT--GGGEEEaaaaaaaaaaaaaagxxaaaxbb
8abp_*_1468abp   -149171RRRTTGSMDALKAAGFPEKQIYQHHHHHHHHHHHHHHT--GGGEEEaaaaaaaaaaaaaagxpaaabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gkl_A_9871gkl   A     CDCADMIUM ION G - 1002
1gkl_A_9871gkl   A     CDCADMIUM ION L - 1003
1gkl_A_9871gkl   A     CDCADMIUM ION S - 1004
1gkl_A_9871gkl   A     CDCADMIUM ION E - 1007
1in0_A_551in0   A     HGMERCURY (II) ION I - 64
1in0_A_551in0   A     MMCMETHYL MERCURY ION I - 64
1in0_A_551in0   A     HGMERCURY (II) ION L - 65
1in0_A_551in0   A     MMCMETHYL MERCURY ION L - 65
1in0_A_551in0   A     HGMERCURY (II) ION I - 66
1in0_A_551in0   A     MMCMETHYL MERCURY ION I - 66
1in0_A_551in0   A     HGMERCURY (II) ION G - 67
1in0_A_551in0   A     MMCMETHYL MERCURY ION G - 67
1in0_A_551in0   A     HGMERCURY (II) ION S - 68
1in0_A_551in0   A     MMCMETHYL MERCURY ION S - 68
1in0_A_551in0   A     HGMERCURY (II) ION C - 69
1in0_A_551in0   A     MMCMETHYL MERCURY ION C - 69
1in0_A_551in0   A     HGMERCURY (II) ION I - 70
1in0_A_551in0   A     MMCMETHYL MERCURY ION I - 70
1in0_A_551in0   A     HGMERCURY (II) ION I - 74
1in0_A_551in0   A     MMCMETHYL MERCURY ION I - 74
1in0_A_551in0   A     HGMERCURY (II) ION E - 75
1in0_A_551in0   A     HGMERCURY (II) ION H - 76
1in0_A_551in0   A     HGMERCURY (II) ION S - 78
1in0_A_551in0   A     HGMERCURY (II) ION L - 79
1in0_A_551in0   A     MMCMETHYL MERCURY ION L - 79
8abp_*_1468abp   *     GLAALPHA D-GALACTOSE T - 147
8abp_*_1468abp   *     GLBBETA-D-GALACTOSE T - 147
8abp_*_1468abp   *     GLBBETA-D-GALACTOSE A - 148
8abp_*_1468abp   *     GLAALPHA D-GALACTOSE R - 151
8abp_*_1468abp   *     GLBBETA-D-GALACTOSE R - 151

Clusters included in this Subclass
CLUSTER: HE.6.54