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Information on SUBCLASS 8.5.1
Subclass Accession number: 4192
Subclass: 8.5.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 22

Average sequence ID (%) : 48.6 +/- 27.5
Average RMSD (Å) : 0.341 +/- 0.165

Consensus geometry
d (Å): 15 delta (°): 45-90 theta (°): 45-90 rho (°): 0-45
Consensus Sequence: hhHXDhXhXNhh
(φψ)-conformation: bbagapbaaabb
Pattern: [CFILVY][ACGIMTV][HY][fr][DN][AILV][akr][ALP][adegqr][N][CFILV][AILM][CILMVY]
Conservation:-0.465-0.8401.734-1.1091.226-0.080-0.504-0.200-0.9891.954-0.279-0.045-0.402
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cm8_A_1491cm8   A149161IIHRDLKPGNLAVEE-----GGGEEExbavaxbaaabxb
1csn_*_1271csn   -127139LVYRDIKPDNFLIEE-----GGGEEEbbavaxbaaabbx
1fvr_A_9601fvr   A960972FIHRDLAARNILVEE-S--SGGGEEExbagaxbaaabbx
1gjo_A_6221gjo   A622634CIHRDLAARNVLVEE-S---STTEEEbbavaxbaaabbb
1ir3_A_11281ir3   A11281140FVHRDLAARNCMVEE-S--SGGGEEEbbavaxbaaabbb
1jks_A_1351jks   A135147IAHFDLKPENIMLEE----SGGGEEEbxavaxbaaabbx
1k9a_A_3101k9a   A310322FVHRDLAARNVLVEE-S---GGGEEEbbaUaxbaaabbb
1kob_A_1701kob   A170182IVHLDIKPENIMCEE-----GGGEEEbbavaxbaaabbx
1m2r_A_1521m2r   A152164IMHRDVKPHNVMIEE----SGGGEEEbbavaxbaaabxb
1mq4_A_2521mq4   A252264VIHRDIKPENLLLEE-----GGGEEExbavaxbaaabbb
1nd4_A_1841nd4   A186198VTHGDACLPNIMVEE-SS--GGGEEExbagaxbaaabbb
1nvr_A_1261nvr   A126138ITHRDIKPENLLLEE-S---GGGEEEbbavaxbaaabxb
1o6y_A_1341o6y   A134146IIHRDVKPANIMIEE----SGGGEEEbbavaxbaaabbb
1omw_A_3131omw   A313325VVYRDLKPANILLEE----SGGGEEEbxagaxbaaabbb
1opk_A_3781opk   A378390FIHRNLAARNCLVEE-S--SGGGEEEbbavaxbaaabbb
1phk_*_1451phk   -145157IVHRDLKPENILLEE-S--SGGGEEEbbavaxbaaabbb
1q41_A_1771q41   A177189ICHRDIKPQNLLLEE-----GGGEEExbavaxbaaabxb
1q8y_A_2901q8y   A290302IIHTDIKPENVLMEE-S--SGGGEEEbbavaxbaaabxb
1qpc_A_3601qpc   A360372YIHRDLRAANILVEE-S--SGGGEEEbbavaxbaaabbb
1rdq_E_1621rdq   E162174LIYRDLKPENLLIEE----SGGGEEExbavaxbaaabbx
1tki_A_1401tki   A140152IGHFDIRPENIIYEE-----GGGEEEbxavaxbaaabbx
1uu3_A_2011uu3   A201213IIHRDLKPENILLEE-S--SGGGEEEbbavaxbaaabxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cm8_A_1491cm8   A     TPOPHOSPHOTHREONINE R - 152
1cm8_A_1491cm8   A     MGMAGNESIUM ION D - 153
1cm8_A_1491cm8   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER D - 153
1cm8_A_1491cm8   A     MGMAGNESIUM ION K - 155
1cm8_A_1491cm8   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER K - 155
1cm8_A_1491cm8   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER P - 156
1cm8_A_1491cm8   A     MGMAGNESIUM ION G - 157
1cm8_A_1491cm8   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER G - 157
1cm8_A_1491cm8   A     MGMAGNESIUM ION N - 158
1cm8_A_1491cm8   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER N - 158
1cm8_A_1491cm8   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER A - 160
1csn_*_1271csn   *     ATPADENOSINE-5'-TRIPHOSPHATE D - 131
1csn_*_1271csn   *     MGMAGNESIUM ION D - 131
1csn_*_1271csn   *     ATPADENOSINE-5'-TRIPHOSPHATE K - 133
1csn_*_1271csn   *     MGMAGNESIUM ION K - 133
1csn_*_1271csn   *     ATPADENOSINE-5'-TRIPHOSPHATE D - 135
1csn_*_1271csn   *     MGMAGNESIUM ION D - 135
1csn_*_1271csn   *     ATPADENOSINE-5'-TRIPHOSPHATE N - 136
1csn_*_1271csn   *     MGMAGNESIUM ION N - 136
1csn_*_1271csn   *     ATPADENOSINE-5'-TRIPHOSPHATE L - 138
1ir3_A_11281ir3   A     PTRO-PHOSPHOTYROSINE F - 1128
1ir3_A_11281ir3   A     PTRO-PHOSPHOTYROSINE V - 1129
1ir3_A_11281ir3   A     PTRO-PHOSPHOTYROSINE R - 1131
1ir3_A_11281ir3   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER D - 1132
1ir3_A_11281ir3   A     MGMAGNESIUM ION D - 1132
1ir3_A_11281ir3   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER R - 1136
1ir3_A_11281ir3   A     MGMAGNESIUM ION R - 1136
1ir3_A_11281ir3   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER N - 1137
1ir3_A_11281ir3   A     MGMAGNESIUM ION N - 1137
1ir3_A_11281ir3   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER M - 1139
1ir3_A_11281ir3   A     MGMAGNESIUM ION M - 1139
1m2r_A_1521m2r   A     MNY5,8-DI-AMINO-1,4-DIHYDROXY-ANTHRAQUINONE H - 160
1m2r_A_1521m2r   A     MNY5,8-DI-AMINO-1,4-DIHYDROXY-ANTHRAQUINONE M - 163
1mq4_A_2521mq4   A     PO4PHOSPHATE ION R - 255
1mq4_A_2521mq4   A     MGMAGNESIUM ION D - 256
1mq4_A_2521mq4   A     ADPADENOSINE-5'-DIPHOSPHATE D - 256
1mq4_A_2521mq4   A     MGMAGNESIUM ION K - 258
1mq4_A_2521mq4   A     MGMAGNESIUM ION E - 260
1mq4_A_2521mq4   A     ADPADENOSINE-5'-DIPHOSPHATE E - 260
1mq4_A_2521mq4   A     MGMAGNESIUM ION N - 261
1mq4_A_2521mq4   A     ADPADENOSINE-5'-DIPHOSPHATE N - 261
1mq4_A_2521mq4   A     ADPADENOSINE-5'-DIPHOSPHATE L - 263
1nd4_A_1841nd4   A     MGMAGNESIUM ION D - 190
1nd4_A_1841nd4   A     KANKANAMYCIN A D - 190
1nd4_A_1841nd4   A     MGMAGNESIUM ION C - 192
1nd4_A_1841nd4   A     KANKANAMYCIN A C - 192
1nd4_A_1841nd4   A     MGMAGNESIUM ION P - 194
1nd4_A_1841nd4   A     KANKANAMYCIN A P - 194
1nd4_A_1841nd4   A     MGMAGNESIUM ION N - 195
1nd4_A_1841nd4   A     KANKANAMYCIN A N - 195
1nd4_A_1841nd4   A     ACTACETATE ION M - 197
1nvr_A_1261nvr   A     STUSTAUROSPORINE K - 132
1nvr_A_1261nvr   A     STUSTAUROSPORINE E - 134
1nvr_A_1261nvr   A     STUSTAUROSPORINE N - 135
1nvr_A_1261nvr   A     STUSTAUROSPORINE L - 136
1nvr_A_1261nvr   A     STUSTAUROSPORINE L - 137
1o6y_A_1341o6y   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER D - 138
1o6y_A_1341o6y   A     MGMAGNESIUM ION D - 138
1o6y_A_1341o6y   A     MGMAGNESIUM ION K - 140
1o6y_A_1341o6y   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER A - 142
1o6y_A_1341o6y   A     MGMAGNESIUM ION A - 142
1o6y_A_1341o6y   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER N - 143
1o6y_A_1341o6y   A     MGMAGNESIUM ION N - 143
1o6y_A_1341o6y   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER M - 145
1opk_A_3781opk   A     P166-(2,6-DICHLOROPHENYL)-2-{[3-(HYDROXYMETHYL)PHENYL] AMINO}-8-METHYLPYRIDO[2,3-D]PYRIMIDIN-7(8H)-ONE L - 389
1opk_A_3781opk   A     GOLGLYCEROL V - 390
1phk_*_1451phk   *     ATPADENOSINE-5'-TRIPHOSPHATE D - 149
1phk_*_1451phk   *     MNMANGANESE (II) ION D - 149
1phk_*_1451phk   *     ATPADENOSINE-5'-TRIPHOSPHATE K - 151
1phk_*_1451phk   *     MNMANGANESE (II) ION K - 151
1phk_*_1451phk   *     ATPADENOSINE-5'-TRIPHOSPHATE E - 153
1phk_*_1451phk   *     MNMANGANESE (II) ION E - 153
1phk_*_1451phk   *     ATPADENOSINE-5'-TRIPHOSPHATE N - 154
1phk_*_1451phk   *     MNMANGANESE (II) ION N - 154
1phk_*_1451phk   *     ATPADENOSINE-5'-TRIPHOSPHATE L - 156
1q41_A_1771q41   A     IXM(Z)-1H,1'H-[2,3']BIINDOLYLIDENE-3,2'-DIONE-3-OXIME Q - 185
1q41_A_1771q41   A     IXM(Z)-1H,1'H-[2,3']BIINDOLYLIDENE-3,2'-DIONE-3-OXIME L - 188
1q8y_A_2901q8y   A     MGMAGNESIUM ION D - 294
1q8y_A_2901q8y   A     MGMAGNESIUM ION K - 296
1q8y_A_2901q8y   A     MGMAGNESIUM ION E - 298
1q8y_A_2901q8y   A     ADPADENOSINE-5'-DIPHOSPHATE E - 298
1q8y_A_2901q8y   A     MGMAGNESIUM ION N - 299
1q8y_A_2901q8y   A     ADPADENOSINE-5'-DIPHOSPHATE N - 299
1q8y_A_2901q8y   A     ADPADENOSINE-5'-DIPHOSPHATE L - 301
1qpc_A_3601qpc   A     PTRO-PHOSPHOTYROSINE I - 361
1qpc_A_3601qpc   A     PTRO-PHOSPHOTYROSINE R - 363
1qpc_A_3601qpc   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER A - 368
1qpc_A_3601qpc   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER N - 369
1qpc_A_3601qpc   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER L - 371
1qpc_A_3601qpc   A     EDO1,2-ETHANEDIOL L - 371
1rdq_E_1621rdq   E     TPOPHOSPHOTHREONINE I - 163
1rdq_E_1621rdq   E     TPOPHOSPHOTHREONINE R - 165
1rdq_E_1621rdq   E     PO4PHOSPHATE ION D - 166
1rdq_E_1621rdq   E     MGMAGNESIUM ION D - 166
1rdq_E_1621rdq   E     ADPADENOSINE-5'-DIPHOSPHATE D - 166
1rdq_E_1621rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE D - 166
1rdq_E_1621rdq   E     PO4PHOSPHATE ION K - 168
1rdq_E_1621rdq   E     MGMAGNESIUM ION K - 168
1rdq_E_1621rdq   E     ADPADENOSINE-5'-DIPHOSPHATE K - 168
1rdq_E_1621rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE K - 168
1rdq_E_1621rdq   E     PO4PHOSPHATE ION E - 170
1rdq_E_1621rdq   E     MGMAGNESIUM ION E - 170
1rdq_E_1621rdq   E     ADPADENOSINE-5'-DIPHOSPHATE E - 170
1rdq_E_1621rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE E - 170
1rdq_E_1621rdq   E     PO4PHOSPHATE ION N - 171
1rdq_E_1621rdq   E     MGMAGNESIUM ION N - 171
1rdq_E_1621rdq   E     ADPADENOSINE-5'-DIPHOSPHATE N - 171
1rdq_E_1621rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE N - 171
1rdq_E_1621rdq   E     ADPADENOSINE-5'-DIPHOSPHATE L - 173
1rdq_E_1621rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE L - 173
1uu3_A_2011uu3   A     SEPPHOSPHOSERINE R - 204
1uu3_A_2011uu3   A     GOLGLYCEROL E - 209
1uu3_A_2011uu3   A     LY4(9R)-9-[(DIMETHYLAMINO)METHYL]-6,7,10,11-TETRAHYDRO-9H,18H-5,21:12,17-DIMETHENODIBENZO[E,K]PYRROLO[3,4-H] [1,4,13]OXADIAZACYCLOHEXADECINE-18,20-DIONE E - 209
1uu3_A_2011uu3   A     LY4(9R)-9-[(DIMETHYLAMINO)METHYL]-6,7,10,11-TETRAHYDRO-9H,18H-5,21:12,17-DIMETHENODIBENZO[E,K]PYRROLO[3,4-H] [1,4,13]OXADIAZACYCLOHEXADECINE-18,20-DIONE N - 210
1uu3_A_2011uu3   A     LY4(9R)-9-[(DIMETHYLAMINO)METHYL]-6,7,10,11-TETRAHYDRO-9H,18H-5,21:12,17-DIMETHENODIBENZO[E,K]PYRROLO[3,4-H] [1,4,13]OXADIAZACYCLOHEXADECINE-18,20-DIONE L - 212
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o6y_A_1341o6y   A MG1MG BINDING SITE FOR CHAIN AN - 143

Clusters included in this Subclass
CLUSTER: AR.7.10