Information on SUBCLASS 12.2.1 |
Subclass Accession number: 4283
Subclass: 12.2.1 Type: AR beta-beta link DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 9 Average sequence ID (%) : 44.6 +/- 28.6 Average RMSD (Å) : 0.389 +/- 0.136 Consensus geometry
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Consensus Sequence: | XhGhhcppXhpGphpp |
(φψ)-conformation: | bblbbpaaabbebpbb |
Pattern: | x | [lvy] | x | [fil] | [g] | [fgy] | [ivy] | [den] | [denst] | [rst] | x | [fly] | [egkt] | [g] | [dps] | [il] | [ant] | [twy] | [tv] | [adgp] |
Conservation: | -1.103 | -0.248 | -1.198 | 0.292 | 2.333 | -0.431 | 0.110 | 0.609 | -0.421 | -0.202 | -1.141 | 0.722 | -0.857 | 2.333 | -0.315 | 0.576 | -0.100 | 0.525 | -0.469 | -1.015 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bxo_A_163 | 1bxo | A | 164 | 183 | VYDFGFIDSSKYTGSLTYTG | EEEESS--GGGBSS--EEEE | bbxbvbbxaaabxebxbxbx |
1ibq_A_160 | 1ibq | A | 163 | 182 | VYDFGYIDDSKYTGSITYTD | EEEESS--GGGBSS--EEEE | bbbbvbbxaaabbexxbbbx |
1oew_A_166 | 1oew | A | 167 | 186 | TYNFGFIDTTAYTGSITYTA | EEEES---TTSSSS--EEEE | bbbbvbbxaaabbebxbxbx |
1pfz_A_165 | 1pfz | A | 167 | 186 | FLTIGGIEERFYEGPLTYEK | EEEESS--GGGBSS--EEEE | bbbbvbbxaaabbexxbxbx |
1pso_E_164 | 1pso | E | 164 | 183 | VVIFGGIDSSYYTGSLNWVP | EEEET---GGGBSS--EEEE | bbbxvbbbaaabbebxxbbx |
2apr_*_167 | 2apr | - | 168 | 187 | EYIFGGYDSTKFKGSLTTVP | EEEET---GGGB-S--EEEE | bbbxvbbbaaabbexxbxbx |
2asi_*_179 | 2asi | - | 181 | 200 | EVVFGGVNNTLLGGDIAYTD | EEEES---GGGBSS--EEEE | bbbxvbbxaaaxaebxbbbx |
3psg_*_163 | 3psg | - | 164 | 183 | VVLLGGIDSSYYTGSLNWVP | EEEET---GGGBSS--EEEE | bbxxvbbbaaabbebxbxbx |
4pep_*_163 | 4pep | - | 164 | 183 | VVLLGGIDSSYYTGSLNWVP | EEEET---TTSB-S--EEEE | bbbxvbbbaaabbebxbbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1bxo_A_163 | 1bxo | A | MANALPHA-D-MANNOSE | G - 163 |
1bxo_A_163 | 1bxo | A | MANALPHA-D-MANNOSE | V - 164 |
1bxo_A_163 | 1bxo | A | MANALPHA-D-MANNOSE | F - 167 |
1bxo_A_163 | 1bxo | A | MANALPHA-D-MANNOSE | G - 168 |
1bxo_A_163 | 1bxo | A | MANALPHA-D-MANNOSE | F - 169 |
1bxo_A_163 | 1bxo | A | GOLGLYCEROL | S - 172 |
1bxo_A_163 | 1bxo | A | GOLGLYCEROL | Y - 175 |
1bxo_A_163 | 1bxo | A | GOLGLYCEROL | G - 177 |
1bxo_A_163 | 1bxo | A | GOLGLYCEROL | S - 178 |
2asi_*_179 | 2asi | * | NAGN-ACETYL-D-GLUCOSAMINE | E - 181 |
2asi_*_179 | 2asi | * | NAGN-ACETYL-D-GLUCOSAMINE | V - 183 |
2asi_*_179 | 2asi | * | NAGN-ACETYL-D-GLUCOSAMINE | N - 188 |
2asi_*_179 | 2asi | * | NAGN-ACETYL-D-GLUCOSAMINE | N - 189 |
2asi_*_179 | 2asi | * | NAGN-ACETYL-D-GLUCOSAMINE | T - 190 |
2asi_*_179 | 2asi | * | NAGN-ACETYL-D-GLUCOSAMINE | L - 191 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1oew_A_166 | 1oew | A | AC4SO4 BINDING SITE FOR CHAIN A | Y - 178 |
1oew_A_166 | 1oew | A | AC4SO4 BINDING SITE FOR CHAIN A | S - 181 |
1oew_A_166 | 1oew | A | AC4SO4 BINDING SITE FOR CHAIN A | I - 182 |
Clusters included in this Subclass |
CLUSTER: AR.11.2 |