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Information on SUBCLASS 1.2.9
Subclass Accession number: 4427
Subclass: 1.2.9 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 14

Average sequence ID (%) : 11.4 +/- 14.2
Average RMSD (Å) : 0.364 +/- 0.145

Consensus geometry
d (Å): 5 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: pXphp
(φψ)-conformation: aabaa
Pattern: [afilvwy]xxx[cdehnty][agpv][adeknqrst]x[agkl]
Conservation:-0.401-0.7740.627-1.0310.7481.8010.272-1.3740.131
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a32_*_501a32   -6977LRNKDVARYHHHH-HHHHaaaabaaaa
1dgf_A_4721dgf   A482490FTEVHPDYGHHHH-HHHHaaaabaaaa
1g8e_A_41g8e   A2432LIVQDKASAHHHH-HHHHaaaabaaaa
1gxy_A_221gxy   A3644DFNMNAKLKHHHH-HHHHaaaabaaaa
1hkh_A_1411hkh   A150158AAKGDRFAWHHHH-HHHHaaaabaaaa
1hna_*_1541hna   -166174NQVFEPSCLHHHH-HHHHaaaabaaaa
1itz_A_3111itz   A329337YEKKYADDAHHHHSHHHHaaaabaaaa
1ji0_A_1131ji0   A121129IFSLFPRLKHHHH-HHHHaaaabaaaa
1jqi_A_711jqi   A8189ISRGCASTGHHHH-HHHHaaaabaaaa
1m7s_A_4691m7s   A479487LYKEDPNYGHHHH-HHHHaaaabaaaa
1pqm_A_1381pqm   A138146WYNQTPNRAHHHHHSHHHaaaabaaaa
1qgd_A_2971qgd   A314322YAKAYPQEAHHHH-HHHHaaaabaaaa
1qsa_A_2121qsa   A225233VARQDAENAHHHH-HHHHaaaabaaaa
2ahj_A_672ahj   A7280LLLTDGTAAHHHH-HHHHaaaabaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ji0_A_1131ji0   A     MSESELENOMETHIONINE G - 113
1ji0_A_1131ji0   A     MSESELENOMETHIONINE I - 114
1ji0_A_1131ji0   A     MSESELENOMETHIONINE K - 115
1ji0_A_1131ji0   A     MSESELENOMETHIONINE D - 117
1ji0_A_1131ji0   A     MSESELENOMETHIONINE L - 118
1ji0_A_1131ji0   A     MSESELENOMETHIONINE I - 121
1ji0_A_1131ji0   A     MSESELENOMETHIONINE L - 124
1ji0_A_1131ji0   A     MSESELENOMETHIONINE F - 125
1ji0_A_1131ji0   A     MSESELENOMETHIONINE L - 128
1jqi_A_711jqi   A     CAAACETOACETYL-COENZYME A V - 90
1jqi_A_711jqi   A     CAAACETOACETYL-COENZYME A V - 94
1jqi_A_711jqi   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 94
1qsa_A_2121qsa   A     GOLGLYCEROL D - 212
1qsa_A_2121qsa   A     GOLGLYCEROL F - 213
1qsa_A_2121qsa   A     GOLGLYCEROL T - 214

Clusters included in this Subclass
CLUSTER: HH.2.54