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Information on SUBCLASS 1.2.25
Subclass Accession number: 4443
Subclass: 1.2.25 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 11.1 +/- 11.9
Average RMSD (Å) : 0.600 +/- 0.200

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXXXX
(φψ)-conformation: aabaa
Pattern: [LPT][FLV][EKL][DSY][HIL][AKL][AQ]x[DP][KV]xx[DNY]x[AL][VY][FQR][QST]
Conservation:-0.7760.398-0.776-0.629-0.482-0.9220.812-0.9222.7400.592-0.922-1.069-0.0420.6390.6301.109-0.7760.398
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dvk_A_1571dvk   A165182TVLYHLQQPKEINLAVQSHHHHHHTSGGGHHHHHHHaaaaaaabaaaaaaaaaa
1hs6_A_5641hs6   A570587LFKDLAAFDKSHDQAVRTHHHHHHHSTTTHHHHHHHaaaaaaaxaaaaaaaaaa
1vj5_A_3691vj5   A369386PLESIKANPVFDYQLYFQHHHHHHT-GGGHHHHHHHaaaaaaabaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1hs6_A_5641hs6   A     BES2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID K - 565
1vj5_A_3691vj5   A     CIUN-CYCLOHEXYL-N'-(4-IODOPHENYL)UREA F - 379
1vj5_A_3691vj5   A     CIUN-CYCLOHEXYL-N'-(4-IODOPHENYL)UREA Y - 381
1vj5_A_3691vj5   A     CIUN-CYCLOHEXYL-N'-(4-IODOPHENYL)UREA Q - 382
1vj5_A_3691vj5   A     CIUN-CYCLOHEXYL-N'-(4-IODOPHENYL)UREA F - 385

Clusters included in this Subclass
CLUSTER: HH.4.220
CLUSTER: HH.5.212