Information on SUBCLASS 1.2.25 |
Subclass Accession number: 4443
Subclass: 1.2.25 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 11.1 +/- 11.9 Average RMSD (Å) : 0.600 +/- 0.200 Consensus geometry
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Consensus Sequence: | XXXXX |
(φψ)-conformation: | aabaa |
Pattern: | [LPT] | [FLV] | [EKL] | [DSY] | [HIL] | [AKL] | [AQ] | x | [DP] | [KV] | x | x | [DNY] | x | [AL] | [VY] | [FQR] | [QST] |
Conservation: | -0.776 | 0.398 | -0.776 | -0.629 | -0.482 | -0.922 | 0.812 | -0.922 | 2.740 | 0.592 | -0.922 | -1.069 | -0.042 | 0.639 | 0.630 | 1.109 | -0.776 | 0.398 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dvk_A_157 | 1dvk | A | 165 | 182 | TVLYHLQQPKEINLAVQS | HHHHHHTSGGGHHHHHHH | aaaaaaabaaaaaaaaaa |
1hs6_A_564 | 1hs6 | A | 570 | 587 | LFKDLAAFDKSHDQAVRT | HHHHHHHSTTTHHHHHHH | aaaaaaaxaaaaaaaaaa |
1vj5_A_369 | 1vj5 | A | 369 | 386 | PLESIKANPVFDYQLYFQ | HHHHHHT-GGGHHHHHHH | aaaaaaabaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1hs6_A_564 | 1hs6 | A | BES2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID | K - 565 |
1vj5_A_369 | 1vj5 | A | CIUN-CYCLOHEXYL-N'-(4-IODOPHENYL)UREA | F - 379 |
1vj5_A_369 | 1vj5 | A | CIUN-CYCLOHEXYL-N'-(4-IODOPHENYL)UREA | Y - 381 |
1vj5_A_369 | 1vj5 | A | CIUN-CYCLOHEXYL-N'-(4-IODOPHENYL)UREA | Q - 382 |
1vj5_A_369 | 1vj5 | A | CIUN-CYCLOHEXYL-N'-(4-IODOPHENYL)UREA | F - 385 |
Clusters included in this Subclass |
CLUSTER: HH.4.220 |
CLUSTER: HH.5.212 |