Information on SUBCLASS 1.3.12 |
Subclass Accession number: 4473
Subclass: 1.3.12 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 17.6 +/- 22.8 Average RMSD (Å) : 0.820 +/- 0.084 Consensus geometry
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Consensus Sequence: | cLcpp |
(φψ)-conformation: | aalaa |
Pattern: | x | x | [AIT] | x | [EMQ] | x | x | x | [DEKN] | [l] | x | [dek] | [ADQT] | [ADES] | [EKQ] | [ILW] | x |
Conservation: | -1.294 | -1.155 | 0.316 | -1.163 | 1.242 | -0.193 | -1.041 | -0.243 | 1.100 | 0.218 | 0.679 | -0.777 | -0.477 | 0.613 | 2.198 | 0.714 | -0.738 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1icr_A_111 | 1icr | A | 123 | 139 | FFADMHRKDLHDDAEWM | HHHHHHHHTT--HHHHH | aaaaaaaaaalaaaaaa |
1jqn_A_734 | 1jqn | A | 735 | 751 | GTALQKVVEDGKQSELE | HHHHHHHHTTT-HHHHH | aaaaaaaaaavaaaaaa |
1kqb_A_111 | 1kqb | A | 123 | 139 | YFADMHRVDLKDDDQWM | HHHHHHHTTT--HHHHH | aaaaaaaaaalaaaaaa |
1pn0_A_58 | 1pn0 | A | 58 | 74 | CRTLESLKNLGLADKIL | HHHHHHHHTTT-HHHHH | aaaaaaaaaavaaaaaa |
1q1s_C_434 | 1q1s | C | 445 | 461 | SNIFQAAEKLGETEKLS | HHHHHHHHTTT-HHHHH | aaaaaaaaaalaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1icr_A_111 | 1icr | A | FMNFLAVIN MONONUCLEOTIDE | R - 121 |
1icr_A_111 | 1icr | A | NIONICOTINIC ACID | F - 124 |
1icr_A_111 | 1icr | A | NIONICOTINIC ACID | W - 138 |
1icr_A_111 | 1icr | A | FMNFLAVIN MONONUCLEOTIDE | Q - 142 |
1icr_A_111 | 1icr | A | FMNFLAVIN MONONUCLEOTIDE | Y - 144 |
1icr_A_111 | 1icr | A | FMNFLAVIN MONONUCLEOTIDE | L - 145 |
1icr_A_111 | 1icr | A | FMNFLAVIN MONONUCLEOTIDE | V - 147 |
1icr_A_111 | 1icr | A | FMNFLAVIN MONONUCLEOTIDE | L - 151 |
1kqb_A_111 | 1kqb | A | BEZBENZOIC ACID | F - 124 |
1kqb_A_111 | 1kqb | A | BEZBENZOIC ACID | W - 138 |
Clusters included in this Subclass |
CLUSTER: HH.5.124 |