ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.1.10

Subclass Accession number: 4510
Subclass: 2.1.10

PSSM

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 10

Average sequence ID (%) : 12.8 +/- 18.8
Average RMSD (Å) : 0.600 +/- 0.149

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	phhXXX
(φψ)-conformation:	aappaa

Pattern:	[gknqst]	x	[AILV]	x	[AEPST]	[AFILVY]	[FLMVY]	[ANPST]	[aegp]	[adegkt]	[adekr]	x
Conservation:	-0.439	-0.350	1.371	-0.881	0.747	0.311	1.355	1.193	-0.200	-1.041	-0.380	-1.687

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1all_A_126	1all	A	138	149	SVATSLLSGADA	HHHHTTS-HHHH	aaaaaabxaaaa
1b33_A_122	1b33	A	134	145	NVASSILSAEDA	HHHTTTS-HHHH	aaaaaaxxaaaa
1c8n_C_222	1c8n	C	222	233	TAAFAALTAFDQ	HHHHHTS-HHHH	aaaaaaxxaaaa
1eex_A_98	1eex	A	102	113	VPLTTAMTPAKI	HHHHTTS-HHHH	aaaaaaxxaaaa
1htj_F_443	1htj	F	458	469	GDILSAYAADRS	HHHHHTS-HHHH	aaaaaaxpaaaa
1lla_*_70	1lla	-	78	89	KEARTFVNEGLF	HHHTTTS-HHHH	aaaaaaxpaaaa
1m1n_A_6	1m1n	A	14	25	QEVLEVYPEKAR	HHHHTTS-HHHH	aaaaaaxpaaaa
1nm8_A_22	1nm8	A	31	42	KALQPIVSEEEW	HHHTTTS-HHHH	aaaaaabxaaaa
1pjr_*_462	1pjr	-	472	483	TQLQEYVSVTEL	HHHTTTS-HHHH	aaaaaNbxaaaa
1qgu_A_3	1qgu	A	13	24	QEVLEVFPETAR	HHHHTTS-HHHH	aaaaaaxpaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1all_A_126	1all	A	CYCPHYCOCYANOBILIN	A - 128
1all_A_126	1all	A	CYCPHYCOCYANOBILIN	I - 129
1all_A_126	1all	A	CYCPHYCOCYANOBILIN	G - 132
1b33_A_122	1b33	A	CYCPHYCOCYANOBILIN	A - 124
1b33_A_122	1b33	A	CYCPHYCOCYANOBILIN	V - 125
1b33_A_122	1b33	A	CYCPHYCOCYANOBILIN	G - 128
1htj_F_443	1htj	F	MSESELENOMETHIONINE	A - 450
1htj_F_443	1htj	F	MSESELENOMETHIONINE	L - 454
1htj_F_443	1htj	F	MSESELENOMETHIONINE	L - 457
1htj_F_443	1htj	F	MSESELENOMETHIONINE	I - 460
1htj_F_443	1htj	F	MSESELENOMETHIONINE	L - 461
1htj_F_443	1htj	F	MSESELENOMETHIONINE	Y - 464
1htj_F_443	1htj	F	MSESELENOMETHIONINE	R - 468
1htj_F_443	1htj	F	MSESELENOMETHIONINE	S - 469

Clusters included in this Subclass

CLUSTER: HH.3.182

CLUSTER: HH.4.138

CLUSTER: HH.5.222

CLUSTER: HH.6.122