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Information on SUBCLASS 2.1.17
Subclass Accession number: 4517
Subclass: 2.1.17 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 16.7 +/- 25.0
Average RMSD (Å) : 0.571 +/- 0.180

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: XhXXhp
(φψ)-conformation: aappaa
Pattern: xxxxx[aikmv]x[dp]x[drs]xx[dkpqs][adet]x[alvy]
Conservation:-0.610-0.289-0.883-0.0480.085-0.006-0.5492.885-1.0830.994-0.987-0.9450.4010.959-0.0540.131
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ala_*_751ala   -8095LMVSLMRPARIFDAHAHHHHHHS-TTTHHHHHaaaaaaxpaaaaaaaa
1ass_*_351ass   -3954EAKVQISDPSKIQDFLHHHHHTS-GGGHHHHHaaaaaaxxaaaaaaaa
1d4x_A_2741d4x   A279294YNSIMKCDIDIRKDLYHHHHHTS-GGGHHHHHaaaaaaxpaaaaaaaa
1dj8_A_181dj8   A1833CEDFLAVDESFQPTAVHHHHHTS-GGGHHHHHaaaaaaxpaaaaaaaa
1k8k_B_2781k8k   B283298FNTIQAADIDTRSEFYHHHHHHS-TTTHHHHHaaaaaaxpaaaaaaaa
1nf1_A_12241nf1   A12251240MALANVVPCSQWDELAHHHHTTS-GGGHHHHHaaaaaappaaaaaaaa
1qz5_A_2741qz5   A279294YNSIMKCDIDIRKDLYHHHHHHS-GGGHHHHHaaaaaaxpaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ala_*_751ala   *     CACALCIUM ION A - 99
1ala_*_751ala   *     CACALCIUM ION I - 100
1ass_*_351ass   *     PO4PHOSPHATE ION S - 45
1ass_*_351ass   *     PO4PHOSPHATE ION D - 46
1ass_*_351ass   *     PO4PHOSPHATE ION P - 47
1ass_*_351ass   *     PO4PHOSPHATE ION S - 48
1ass_*_351ass   *     PO4PHOSPHATE ION I - 50

Clusters included in this Subclass
CLUSTER: HH.5.127
CLUSTER: HH.6.70
CLUSTER: HH.7.110